Update versionv0.5.1

4 files changed, 435 insertions, 26 deletions

diff --git a/doc/build/man/papis-config.1 b/doc/build/man/papis-config.1
index 5325faf9..45a821d2 100644
--- a/doc/build/man/papis-config.1
+++ b/doc/build/man/papis-config.1
@@ -1,6 +1,6 @@
 .\" Man page generated from reStructuredText.
 .
-.TH "PAPIS-CONFIG" "1" "Dec 06, 2017" "0.4.9" "papis"
+.TH "PAPIS-CONFIG" "1" "Dec 23, 2017" "0.5.1" "papis"
 .SH NAME
 papis-config \- Papis Configuration
 .
@@ -123,10 +123,53 @@ vim\-gui\-header\-format = Title: %(header\-format)s
 .fi
 .UNINDENT
 .UNINDENT
+.SH LOCAL CONFIGURATION FILES
+.sp
+Papis also offers the possibility of creating local configuration files.
+The name of the local configuration file can be configured with the
+\fBlocal\-config\-file\fP setting.
+.sp
+The local configuration file can be found in the current directory of
+where you are issuing the papis command or in the directory of the
+library that you are considering in the papis command.
+.sp
+For instance let us suppose that you are in some project folder
+\fB~/Documents/myproject\fP and you have a local config file there
+with a definition of a new library. Then whenever you are
+in the \fB~/Documents/myproject\fP directory papis will also source the
+local configuration file found there.
+.sp
+On the other hand, also if you have a configuration file in the library folder
+for your papers, for instance in
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+~/Documents/papers/.papis.config
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+then everytime that you use this library also papis will source this
+configuration file.
 .SH DEFAULT SETTINGS
 .SS General
 .INDENT 0.0
 .TP
+\fBlocal\-config\-file\fP (\fI\%config\-settings\-local\-config\-file\fP)
+.INDENT 7.0
+.IP \(bu 2
+\fBDefault\fP: \fB\&.papis.config\fP
+.UNINDENT
+.UNINDENT
+.sp
+Name AND relative path of the local configuration file that papis
+will additionally read if the file is present in the current
+directory or in the base directory of a given library.
+.INDENT 0.0
+.TP
 \fBmode\fP (\fI\%config\-settings\-mode\fP)
 .INDENT 7.0
 .IP \(bu 2
@@ -273,7 +316,7 @@ for the given library.
 \fBcache\-dir\fP (\fI\%config\-settings\-cache\-dir\fP)
 .INDENT 7.0
 .IP \(bu 2
-\fBDefault\fP: \fB/home/ale/.cache/papis\fP
+\fBDefault\fP: \fB/home/gallo/.cache/papis\fP
 .UNINDENT
 .UNINDENT
 .INDENT 0.0
@@ -322,6 +365,17 @@ your documents to be \fBauthor\-title\fP then you should set it to
 the papis format: \fB{doc[author]}\-{doc[title]}\fP\&.
 .INDENT 0.0
 .TP
+\fBfile\-name\fP (\fI\%config\-settings\-file\-name\fP)
+.INDENT 7.0
+.IP \(bu 2
+\fBDefault\fP: \fBNone\fP
+.UNINDENT
+.UNINDENT
+.sp
+Same as \fBadd\-name\fP, but for files, not folders. If it is not set,
+the names of the files will be cleaned and taken \fIas\-is\fP\&.
+.INDENT 0.0
+.TP
 \fBadd\-interactive\fP (\fI\%config\-settings\-add\-interactive\fP)
 .INDENT 7.0
 .IP \(bu 2
@@ -681,6 +735,26 @@ in your info file or not. If it is set to false then a representation
 for the unicode characters will be written in its place.
 Since we should be living in an unicode world, it is set to \fBTrue\fP
 by default.
+.INDENT 0.0
+.TP
+\fBref\-format\fP (\fI\%config\-settings\-ref\-format\fP)
+.INDENT 7.0
+.IP \(bu 2
+\fBDefault\fP: \fB{doc[doi]}\fP
+.UNINDENT
+.UNINDENT
+.sp
+This flag is set to change the \fBref\fP flag in the info.yaml file
+when a document is imported. For example: I prefer the format
+FirstAuthorYear e.g. Plews2019. This would be achieved by the
+following:
+.INDENT 0.0
+.INDENT 3.5
+\fBref\-format = {doc[author_list][0][surname]}{doc[year]}\fP
+.UNINDENT
+.UNINDENT
+.sp
+The default behaviour is to set the doi as the ref.
 .SS Vim gui
 .INDENT 0.0
 .TP
diff --git a/doc/build/man/papis.1 b/doc/build/man/papis.1
index 32793299..855c6ca7 100644
--- a/doc/build/man/papis.1
+++ b/doc/build/man/papis.1
@@ -1,6 +1,6 @@
 .\" Man page generated from reStructuredText.
 .
-.TH "PAPIS" "1" "Dec 06, 2017" "0.4.9" "papis"
+.TH "PAPIS" "1" "Dec 23, 2017" "0.5.1" "papis"
 .SH NAME
 papis \- Papis Documentation
 .
@@ -481,10 +481,53 @@ vim\-gui\-header\-format = Title: %(header\-format)s
 .fi
 .UNINDENT
 .UNINDENT
+.SS Local configuration files
+.sp
+Papis also offers the possibility of creating local configuration files.
+The name of the local configuration file can be configured with the
+\fBlocal\-config\-file\fP setting.
+.sp
+The local configuration file can be found in the current directory of
+where you are issuing the papis command or in the directory of the
+library that you are considering in the papis command.
+.sp
+For instance let us suppose that you are in some project folder
+\fB~/Documents/myproject\fP and you have a local config file there
+with a definition of a new library. Then whenever you are
+in the \fB~/Documents/myproject\fP directory papis will also source the
+local configuration file found there.
+.sp
+On the other hand, also if you have a configuration file in the library folder
+for your papers, for instance in
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+~/Documents/papers/.papis.config
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+then everytime that you use this library also papis will source this
+configuration file.
 .SS Default settings
 .SS General
 .INDENT 0.0
 .TP
+\fBlocal\-config\-file\fP (\fI\%config\-settings\-local\-config\-file\fP)
+.INDENT 7.0
+.IP \(bu 2
+\fBDefault\fP: \fB\&.papis.config\fP
+.UNINDENT
+.UNINDENT
+.sp
+Name AND relative path of the local configuration file that papis
+will additionally read if the file is present in the current
+directory or in the base directory of a given library.
+.INDENT 0.0
+.TP
 \fBmode\fP (\fI\%config\-settings\-mode\fP)
 .INDENT 7.0
 .IP \(bu 2
@@ -631,7 +674,7 @@ for the given library.
 \fBcache\-dir\fP (\fI\%config\-settings\-cache\-dir\fP)
 .INDENT 7.0
 .IP \(bu 2
-\fBDefault\fP: \fB/home/ale/.cache/papis\fP
+\fBDefault\fP: \fB/home/gallo/.cache/papis\fP
 .UNINDENT
 .UNINDENT
 .INDENT 0.0
@@ -680,6 +723,17 @@ your documents to be \fBauthor\-title\fP then you should set it to
 the papis format: \fB{doc[author]}\-{doc[title]}\fP\&.
 .INDENT 0.0
 .TP
+\fBfile\-name\fP (\fI\%config\-settings\-file\-name\fP)
+.INDENT 7.0
+.IP \(bu 2
+\fBDefault\fP: \fBNone\fP
+.UNINDENT
+.UNINDENT
+.sp
+Same as \fBadd\-name\fP, but for files, not folders. If it is not set,
+the names of the files will be cleaned and taken \fIas\-is\fP\&.
+.INDENT 0.0
+.TP
 \fBadd\-interactive\fP (\fI\%config\-settings\-add\-interactive\fP)
 .INDENT 7.0
 .IP \(bu 2
@@ -1039,6 +1093,26 @@ in your info file or not. If it is set to false then a representation
 for the unicode characters will be written in its place.
 Since we should be living in an unicode world, it is set to \fBTrue\fP
 by default.
+.INDENT 0.0
+.TP
+\fBref\-format\fP (\fI\%config\-settings\-ref\-format\fP)
+.INDENT 7.0
+.IP \(bu 2
+\fBDefault\fP: \fB{doc[doi]}\fP
+.UNINDENT
+.UNINDENT
+.sp
+This flag is set to change the \fBref\fP flag in the info.yaml file
+when a document is imported. For example: I prefer the format
+FirstAuthorYear e.g. Plews2019. This would be achieved by the
+following:
+.INDENT 0.0
+.INDENT 3.5
+\fBref\-format = {doc[author_list][0][surname]}{doc[year]}\fP
+.UNINDENT
+.UNINDENT
+.sp
+The default behaviour is to set the doi as the ref.
 .SS Vim gui
 .INDENT 0.0
 .TP
@@ -1813,6 +1887,20 @@ papis add ~/Documents/interesting.pdf \-\-from\-doi 10.10763/1.3237134
 .fi
 .UNINDENT
 .UNINDENT
+.INDENT 0.0
+.IP \(bu 2
+Add paper to a library named \fBmachine\-learning\fP from \fBarxiv.org\fP
+.UNINDENT
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis \-l machine\-learning add \-\-from\-url https://arxiv.org/abs/1712.03134
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
 .UNINDENT
 .UNINDENT
 .INDENT 0.0
@@ -1820,8 +1908,8 @@ papis add ~/Documents/interesting.pdf \-\-from\-doi 10.10763/1.3237134
 .sp
 .nf
 .ft C
-usage: papis add [\-h] [\-d DIR] [\-i] [\-\-name NAME] [\-\-title TITLE]
-                 [\-\-author AUTHOR] [\-\-from\-bibtex FROM_BIBTEX]
+usage: papis add [\-h] [\-d DIR] [\-i] [\-\-name NAME] [\-\-file\-name FILE_NAME]
+                 [\-\-title TITLE] [\-\-author AUTHOR] [\-\-from\-bibtex FROM_BIBTEX]
                  [\-\-from\-yaml FROM_YAML] [\-\-from\-folder FROM_FOLDER]
                  [\-\-from\-url FROM_URL] [\-\-from\-doi FROM_DOI]
                  [\-\-from\-pmid FROM_PMID] [\-\-from\-lib FROM_LIB]
@@ -1858,6 +1946,9 @@ Name for the document’s folder (papis format)
 .sp
 Default: “”
 .TP
+.B\-\-file\-name
+File name for the document (papis format)
+.TP
 .B\-\-title
 Title for document
 .sp
@@ -2251,8 +2342,8 @@ Default: False
 .sp
 .nf
 .ft C
-usage: papis explore [\-h] [\-\-isbnplus] [\-\-arxiv] [\-\-libgen] [\-\-add]
-                     [\-\-max MAX]
+usage: papis explore [\-h] [\-\-isbnplus] [\-\-arxiv] [\-\-libgen] [\-\-crossref]
+                     [\-\-add] [\-\-max MAX] [\-\-cmd CMD]
                      search
 .ft P
 .fi
@@ -2284,6 +2375,11 @@ Search on library genesis
 .sp
 Default: False
 .TP
+.B\-\-crossref
+Search on library genesis
+.sp
+Default: False
+.TP
 .B\-\-add
 Add document selected
 .sp
@@ -2293,6 +2389,9 @@ Default: False
 Maximum number of items
 .sp
 Default: 30
+.TP
+.B\-\-cmd
+Issue a command on the retrieved document using papis format
 .UNINDENT
 .SS Remove
 .INDENT 0.0
@@ -2332,7 +2431,7 @@ Default: False
 .sp
 .nf
 .ft C
-usage: papis gui [\-h] [\-\-tk] [\-\-rofi] [\-\-vim]
+usage: papis gui [\-h] [\-\-tk] [\-\-rofi] [\-\-urwid] [\-\-vim]
 .ft P
 .fi
 .UNINDENT
@@ -2350,6 +2449,11 @@ Rofi based UI
 .sp
 Default: False
 .TP
+.B\-\-urwid
+Urwid based UI
+.sp
+Default: False
+.TP
 .B\-\-vim
 Vim based UI
 .sp
@@ -2420,7 +2524,7 @@ papis list \-\-template bibitem.template
 .nf
 .ft C
 usage: papis list [\-h] [\-i] [\-f] [\-d] [\-\-format FORMAT] [\-\-template TEMPLATE]
-                  [\-p] [\-\-downloaders]
+                  [\-p] [\-\-downloaders] [\-\-libraries]
                   [search]
 .ft P
 .fi
@@ -2467,6 +2571,11 @@ Default: False
 List available downloaders
 .sp
 Default: False
+.TP
+.B\-\-libraries
+List defined libraries
+.sp
+Default: False
 .UNINDENT
 .SS Browse
 .sp
@@ -3104,7 +3213,201 @@ args passed by the user.
 .UNINDENT
 .SH GIT
 .sp
-Papis is conceived to work well with the tool \fIgit\fP\&.
+Papis is conceived to work well with the tool \fIgit\fP, this would also work with
+\fI\%mercurial\fP
+or \fI\%subversion\fP\&.
+.sp
+Here you will find a description of a possible workflow using git with papis.
+This is not the only workflow, but it is the most obvious.
+.sp
+Let’s say you have a library named \fBbooks\fP in the directory
+\fB~/Documents/MyNiceBooks\fP\&. You could turn the \fBbooks\fP library into
+a \fIgit\fP repository, just doing for example
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis \-l books run git init
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+or just going to the library directory and running the command there:
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+cd ~/Documents/MyNiceBooks
+git init
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+Now you can add everything you have in the library with \fBgit add .\fP
+if you are in the library’s directory or
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis \-l books git add .
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+if you want to do it using the \fIpapis\fP’ \fBgit\fP command.
+.SS Interplay with other commands
+.sp
+Some papis commands give you the opportunity of using \fBgit\fP to manage
+changes. For instance if you are adding a new document, you could use
+the \fB\-\-commit\fP flag to also add a commit into your library, so if you do
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis add \-\-author "Pedrito" \-\-title "Super book" book.pdf \-\-commit
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+then also papis will do an automatic commit for the book, so that you can
+push your library afterwards to a remote repository.
+.sp
+You can imagine that papis command like \fBrename\fP and \fBmv\fP should also
+offer such functionality, and they indeed do through the \fB\-\-git\fP flag.
+Go to their documentation for more information.
+.SS Updating the libray
+.sp
+You can use the papis’ simple \fBgit\fP wrapper,
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git pull
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.SS Usual workflow
+.sp
+Usually the workflow is like this:
+.sp
+When adding a document that you know for sure you want in your library:
+.INDENT 0.0
+.INDENT 3.5
+.INDENT 0.0
+.IP \(bu 2
+Add the document and commit it, either by \fBgit add \-\-commit\fP
+or committing the document after adding it to the library.
+.IP \(bu 2
+Pull changes from the remote library, maybe you pushed something
+at work (reference changes etc..) and you do not have it yet there,
+you would do something like
+.INDENT 2.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git pull
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.IP \(bu 2
+Push what you just added
+.INDENT 2.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git push
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.IP \(bu 2
+Review the status of the library
+.INDENT 2.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git status
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.UNINDENT
+.UNINDENT
+.UNINDENT
+.sp
+When editing a document’s info file:
+.INDENT 0.0
+.INDENT 3.5
+.INDENT 0.0
+.IP \(bu 2
+Edit the file and then take a look at the \fBdiff\fP maybe
+.INDENT 2.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git diff
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.IP \(bu 2
+Add the changes
+.INDENT 2.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git add \-a
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.IP \(bu 2
+Commit
+.INDENT 2.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git commit
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.IP \(bu 2
+Pull/push:
+.INDENT 2.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+papis git pull
+papis git push
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.UNINDENT
+.UNINDENT
+.UNINDENT
+.sp
+Of course these workflows are just very basic examples, you can imagine
+that your workflow would look completely different.
 .SH SCIHUB SUPPORT
 .sp
 Papis has a script that uses the scihub platform to download scientific
@@ -3380,6 +3683,38 @@ You can check \fI\%issue #18\fP
 for more information.
 .UNINDENT
 .UNINDENT
+.SH SHELL AUTOCOMPLETION
+.sp
+Papis has a bash autocompletion script that comes installed
+when you install papis with \fBpip3\fP\&.
+.sp
+It should be installed in a relative path
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+PREFIX/etc/bash_completion.d/papis
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+normally the \fBPREFIX\fP part is \fB/usr/local/\fP, so you can add the
+following line to your \fB~/.bashrc\fP file
+.INDENT 0.0
+.INDENT 3.5
+.sp
+.nf
+.ft C
+source /usr/local/etc/bash_completion.d/papis
+.ft P
+.fi
+.UNINDENT
+.UNINDENT
+.sp
+or get the bash script from
+\fI\%here\fP\&.
 .SH FAQ
 .sp
 Here are some problems that users have come accross with often:
diff --git a/papis/__init__.py b/papis/__init__.py
index 9e312d92..21668286 100644
--- a/papis/__init__.py
+++ b/papis/__init__.py
@@ -1,7 +1,7 @@
 
 # Information
 __license__ = 'GPLv3'
-__version__ = '0.5.0'
+__version__ = '0.5.1'
 __author__ = __maintainer__ = 'Alejandro Gallo'
 __email__ = 'aamsgallo@gmail.com'
 
diff --git a/scripts/shell_completion/build/bash/papis b/scripts/shell_completion/build/bash/papis
index 85b9a88f..d333d972 100644
--- a/scripts/shell_completion/build/bash/papis
+++ b/scripts/shell_completion/build/bash/papis
@@ -13,17 +13,17 @@ case "$cur" in
   -*)
   COMPREPLY=( $( compgen -W " -c	 --cc	 --clear-cache	 --config	 --cores	 -h	 --help	 -j	 -l	 --lib	 --log	 --pick-lib	 --picktool	 --set	 -v	 -V	 --verbose	 --version" -- $cur ) );;
   * )
-  COMPREPLY=( $( compgen -W "add	check	config	edit	export	explore	list	rm	mv	rename	open	browse	update	run	git	gui	sync	add-from-mail	call	crawl	scihub	mail	mutt	doi	zotero	hubation	ga	update-scripts" -- $cur ) );;
+  COMPREPLY=( $( compgen -W "add	check	config	edit	export	explore	list	rm	mv	rename	open	browse	update	run	git	gui	sync	zotero	doi	call	scihub	hubation	crawl	mutt	update-scripts	add-from-mail	ga	mail" -- $cur ) );;
 esac
 
 case "$prev" in
 
   config)
-    COMPREPLY=( $( compgen -W " -h	 --help browser	check-keys	use-cache	info-name	editor	extra-bibtex-types	add-name	opentool	default-library	match-format	database-backend	user-agent	mark-opener-format	default-gui	ref-format	mark-format-name	header-format	notes-name	info-allow-unicode	file-browser	dir-umask	format-doc-name	mark-key-name	mark-header-format	local-config-file	add-confirm	scripts-short-help-regex	export-text-format	extra-bibtex-keys	add-interactive	mode	doc-url-key-name	cache-dir	open-mark	use-git	mvtool	search-engine	sync-command	xeditor	browse-query-format	add-edit	mark-match-format	add-open	picktool	urwid-gui-help-key	urwid-gui-kill-buffer-key	urwid-gui-redraw-key	urwid-gui-show-fields	urwid-gui-prompt-key	urwid-gui-search-key	urwid-gui-quit-key	rofi-gui-case_sensitive	rofi-gui-sep	rofi-gui-normal_window	rofi-gui-width	rofi-gui-multi_select	rofi-gui-key-browse	rofi-gui-header-format	rofi-gui-key-quit	rofi-gui-fullscreen	rofi-gui-markup_rows	rofi-gui-fixed_lines	rofi-gui-key-normal-window	rofi-gui-lines	rofi-gui-key-edit	rofi-gui-key-delete	rofi-gui-key-open-stay	rofi-gui-key-open	rofi-gui-key-help	rofi-gui-eh	vim-gui-help-key	vim-gui-next-search-key	vim-gui-edit-key	vim-gui-prev-search-key	vim-gui-search-key	vim-gui-header-format	vim-gui-delete-key	vim-gui-open-dir-key	vim-gui-open-key	tk-gui-window-bg	tk-gui-move_up	tk-gui-activebackground	tk-gui-activeforeground	tk-gui-move_down	tk-gui-borderwidth	tk-gui-focus_prompt	tk-gui-move_top	tk-gui-height	tk-gui-labels-per-page	tk-gui-clear	tk-gui-entry-bg-odd	tk-gui-prompt-bg	tk-gui-match-format	tk-gui-window-width	tk-gui-window-height	tk-gui-half_up	tk-gui-print_info	tk-gui-entry-fg	tk-gui-scroll_up	tk-gui-edit	tk-gui-move_bottom	tk-gui-entry-bg-pair	tk-gui-help	tk-gui-scroll_down	tk-gui-prompt-font-size	tk-gui-entry-font-size	tk-gui-header-format	tk-gui-cursor	tk-gui-entry-font-name	tk-gui-entry-lines	tk-gui-entry-bg-size	tk-gui-exit	tk-gui-insertbackground	tk-gui-prompt-fg	tk-gui-entry-font-style	tk-gui-open	tk-gui-half_down" -- $cur ) )
+    COMPREPLY=( $( compgen -W " -h	 --help info-allow-unicode	browser	export-text-format	mode	extra-bibtex-types	format-doc-name	add-open	editor	add-interactive	search-engine	file-name	doc-url-key-name	xeditor	add-name	dir-umask	database-backend	ref-format	notes-name	use-cache	mvtool	cache-dir	open-mark	user-agent	mark-format-name	local-config-file	sync-command	add-confirm	extra-bibtex-keys	use-git	browse-query-format	mark-match-format	mark-opener-format	header-format	default-library	opentool	scripts-short-help-regex	info-name	match-format	mark-key-name	default-gui	mark-header-format	add-edit	file-browser	picktool	check-keys	rofi-gui-key-browse	rofi-gui-multi_select	rofi-gui-key-normal-window	rofi-gui-key-delete	rofi-gui-key-help	rofi-gui-fullscreen	rofi-gui-fixed_lines	rofi-gui-markup_rows	rofi-gui-key-edit	rofi-gui-lines	rofi-gui-normal_window	rofi-gui-header-format	rofi-gui-sep	rofi-gui-width	rofi-gui-key-open	rofi-gui-key-quit	rofi-gui-eh	rofi-gui-key-open-stay	rofi-gui-case_sensitive	tk-gui-entry-bg-odd	tk-gui-print_info	tk-gui-prompt-fg	tk-gui-header-format	tk-gui-entry-bg-size	tk-gui-move_down	tk-gui-help	tk-gui-labels-per-page	tk-gui-entry-lines	tk-gui-window-height	tk-gui-move_bottom	tk-gui-entry-fg	tk-gui-entry-font-name	tk-gui-cursor	tk-gui-insertbackground	tk-gui-window-width	tk-gui-borderwidth	tk-gui-entry-font-size	tk-gui-edit	tk-gui-scroll_up	tk-gui-focus_prompt	tk-gui-activeforeground	tk-gui-open	tk-gui-entry-font-style	tk-gui-prompt-font-size	tk-gui-match-format	tk-gui-activebackground	tk-gui-move_up	tk-gui-clear	tk-gui-move_top	tk-gui-exit	tk-gui-height	tk-gui-entry-bg-pair	tk-gui-prompt-bg	tk-gui-window-bg	tk-gui-scroll_down	tk-gui-half_down	tk-gui-half_up	urwid-gui-redraw-key	urwid-gui-show-fields	urwid-gui-prompt-key	urwid-gui-quit-key	urwid-gui-kill-buffer-key	urwid-gui-search-key	urwid-gui-help-key	vim-gui-delete-key	vim-gui-open-dir-key	vim-gui-header-format	vim-gui-open-key	vim-gui-next-search-key	vim-gui-edit-key	vim-gui-search-key	vim-gui-help-key	vim-gui-prev-search-key" -- $cur ) )
     ;;
 
   add)
-    COMPREPLY=( $( compgen -W " --author	 --commit	 --confirm	 -d	 --dir	 --edit	 --from-bibtex	 --from-doi	 --from-folder	 --from-lib	 --from-pmid	 --from-url	 --from-vcf	 --from-yaml	 -h	 --help	 -i	 --interactive	 --name	 --no-document	 --open	 --title	 --to" -- $cur ) )
+    COMPREPLY=( $( compgen -W " --author	 --commit	 --confirm	 -d	 --dir	 --edit	 --file-name	 --from-bibtex	 --from-doi	 --from-folder	 --from-lib	 --from-pmid	 --from-url	 --from-vcf	 --from-yaml	 -h	 --help	 -i	 --interactive	 --name	 --no-document	 --open	 --title	 --to" -- $cur ) )
     ;;
 
   check)
@@ -43,7 +43,7 @@ case "$prev" in
     ;;
 
   explore)
-    COMPREPLY=( $( compgen -W " --add	 --arxiv	 -h	 --help	 --isbnplus	 --libgen	 --max" -- $cur ) )
+    COMPREPLY=( $( compgen -W " --add	 --arxiv	 --cmd	 --crossref	 -h	 --help	 --isbnplus	 --libgen	 --max" -- $cur ) )
     ;;
 
   list)
@@ -90,15 +90,15 @@ case "$prev" in
     COMPREPLY=( $( compgen -W " -h	 --help" -- $cur ) )
     ;;
 
-  add-from-mail)
+  zotero)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
-  call)
+  doi)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
-  crawl)
+  call)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
@@ -106,23 +106,23 @@ case "$prev" in
     COMPREPLY=( $( compgen -W " -d	 --from-doi	 --name" -- $cur ) )
     ;;
 
-  mail)
+  hubation)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
-  mutt)
+  crawl)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
-  doi)
+  mutt)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
-  zotero)
+  update-scripts)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
-  hubation)
+  add-from-mail)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
@@ -130,7 +130,7 @@ case "$prev" in
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
-  update-scripts)
+  mail)
     COMPREPLY=( $( compgen -W "" -- $cur ) )
     ;;
 
@@ -156,7 +156,7 @@ case "$prev" in
     ;;
 
   --set)
-    COMPREPLY=( $( compgen -W "add-confirm=	mark-opener-format=	add-name=	picktool=	ref-format=	open-mark=	editor=	mode=	check-keys=	user-agent=	browse-query-format=	notes-name=	use-cache=	info-name=	cache-dir=	sync-command=	file-browser=	add-edit=	info-allow-unicode=	extra-bibtex-types=	opentool=	default-library=	add-open=	match-format=	mark-header-format=	xeditor=	dir-umask=	add-interactive=	database-backend=	scripts-short-help-regex=	mark-key-name=	mark-match-format=	search-engine=	doc-url-key-name=	mvtool=	local-config-file=	extra-bibtex-keys=	header-format=	export-text-format=	format-doc-name=	default-gui=	use-git=	mark-format-name=	browser=	tk-gui-half_up=	tk-gui-cursor=	tk-gui-move_down=	tk-gui-entry-fg=	tk-gui-exit=	tk-gui-borderwidth=	tk-gui-open=	tk-gui-prompt-bg=	tk-gui-entry-font-style=	tk-gui-prompt-fg=	tk-gui-edit=	tk-gui-activebackground=	tk-gui-labels-per-page=	tk-gui-activeforeground=	tk-gui-window-bg=	tk-gui-focus_prompt=	tk-gui-print_info=	tk-gui-window-height=	tk-gui-clear=	tk-gui-scroll_up=	tk-gui-entry-bg-pair=	tk-gui-entry-font-size=	tk-gui-half_down=	tk-gui-help=	tk-gui-scroll_down=	tk-gui-header-format=	tk-gui-move_bottom=	tk-gui-entry-bg-odd=	tk-gui-prompt-font-size=	tk-gui-entry-bg-size=	tk-gui-entry-lines=	tk-gui-insertbackground=	tk-gui-move_top=	tk-gui-window-width=	tk-gui-height=	tk-gui-match-format=	tk-gui-move_up=	tk-gui-entry-font-name=	vim-gui-edit-key=	vim-gui-help-key=	vim-gui-next-search-key=	vim-gui-open-key=	vim-gui-prev-search-key=	vim-gui-search-key=	vim-gui-delete-key=	vim-gui-header-format=	vim-gui-open-dir-key=	rofi-gui-key-quit=	rofi-gui-key-edit=	rofi-gui-multi_select=	rofi-gui-key-open=	rofi-gui-key-normal-window=	rofi-gui-key-help=	rofi-gui-lines=	rofi-gui-case_sensitive=	rofi-gui-fullscreen=	rofi-gui-key-browse=	rofi-gui-key-open-stay=	rofi-gui-header-format=	rofi-gui-normal_window=	rofi-gui-markup_rows=	rofi-gui-sep=	rofi-gui-fixed_lines=	rofi-gui-eh=	rofi-gui-key-delete=	rofi-gui-width=	urwid-gui-show-fields=	urwid-gui-help-key=	urwid-gui-prompt-key=	urwid-gui-kill-buffer-key=	urwid-gui-quit-key=	urwid-gui-search-key=	urwid-gui-redraw-key=" -- $cur ) )
+    COMPREPLY=( $( compgen -W "default-gui=	mark-header-format=	mode=	ref-format=	add-name=	extra-bibtex-keys=	mark-match-format=	export-text-format=	match-format=	search-engine=	mark-opener-format=	add-open=	format-doc-name=	mark-key-name=	header-format=	xeditor=	add-edit=	user-agent=	file-name=	opentool=	scripts-short-help-regex=	info-name=	add-interactive=	browser=	picktool=	doc-url-key-name=	use-git=	cache-dir=	sync-command=	mvtool=	local-config-file=	default-library=	file-browser=	dir-umask=	editor=	check-keys=	use-cache=	browse-query-format=	extra-bibtex-types=	open-mark=	info-allow-unicode=	add-confirm=	database-backend=	mark-format-name=	notes-name=	vim-gui-delete-key=	vim-gui-search-key=	vim-gui-open-dir-key=	vim-gui-prev-search-key=	vim-gui-next-search-key=	vim-gui-help-key=	vim-gui-edit-key=	vim-gui-header-format=	vim-gui-open-key=	tk-gui-edit=	tk-gui-entry-bg-pair=	tk-gui-height=	tk-gui-half_up=	tk-gui-cursor=	tk-gui-entry-font-size=	tk-gui-entry-bg-size=	tk-gui-entry-font-name=	tk-gui-activeforeground=	tk-gui-open=	tk-gui-entry-lines=	tk-gui-entry-bg-odd=	tk-gui-half_down=	tk-gui-scroll_down=	tk-gui-move_up=	tk-gui-entry-font-style=	tk-gui-borderwidth=	tk-gui-help=	tk-gui-prompt-bg=	tk-gui-move_bottom=	tk-gui-scroll_up=	tk-gui-header-format=	tk-gui-activebackground=	tk-gui-entry-fg=	tk-gui-window-width=	tk-gui-match-format=	tk-gui-move_top=	tk-gui-prompt-fg=	tk-gui-window-bg=	tk-gui-labels-per-page=	tk-gui-move_down=	tk-gui-prompt-font-size=	tk-gui-exit=	tk-gui-focus_prompt=	tk-gui-insertbackground=	tk-gui-window-height=	tk-gui-print_info=	tk-gui-clear=	rofi-gui-fullscreen=	rofi-gui-case_sensitive=	rofi-gui-key-delete=	rofi-gui-lines=	rofi-gui-multi_select=	rofi-gui-key-normal-window=	rofi-gui-header-format=	rofi-gui-key-quit=	rofi-gui-key-edit=	rofi-gui-key-open-stay=	rofi-gui-eh=	rofi-gui-key-help=	rofi-gui-key-open=	rofi-gui-normal_window=	rofi-gui-sep=	rofi-gui-fixed_lines=	rofi-gui-markup_rows=	rofi-gui-width=	rofi-gui-key-browse=	urwid-gui-prompt-key=	urwid-gui-search-key=	urwid-gui-quit-key=	urwid-gui-redraw-key=	urwid-gui-help-key=	urwid-gui-show-fields=	urwid-gui-kill-buffer-key=" -- $cur ) )
     ;;
 
 esac