blob: 4ae4806a6836b98ff180d835859585953d1662cb (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
|
# This file is generated from generate-r-packages.R. DO NOT EDIT.
# Execute the following command to update the file.
#
# Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix
{ self, derive }:
let derive2 = derive { rVersion = "3.2"; };
in with self; {
ABAData = derive2 { name="ABAData"; version="1.0.0"; sha256="1p2q03c87ilwfz7gbypkfi0n3m9m3c4z6ci9b5v4pr46q4ppl7s9"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.12.0"; sha256="1k4sx1ras9g9zbx34r5nxyrik5c5jzb4b1zxf4551q5xfy97w354"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.10.0"; sha256="0c1ma3lzh1dvmz7h1pw0r9vvq9y0xmc1hjm0lwr3ql509lim82aw"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.6.0"; sha256="1bn41pmk7mfdncjnd103spfdcxrwz5jgdycb37kgq1hk36qzw3mj"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.6.0"; sha256="03gb68gw3q6aig3r510h9rwlhj4g40n1dsic2iyj5cs9fmj6gfq1"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.4.0"; sha256="1bzc53gcazsl3958nnq3igy4xrd693gl9gsrz48zaj47gwij2la0"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.8.0"; sha256="0cm5giv12p3cx3z0ync7pgj309n4xy630y9wr70pb7n9kr0f5gjf"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.8.0"; sha256="1cag2mc81qcqx8gwlg4xyvm4a6qayjajwdna8mcwki42gjdl15x4"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.8.0"; sha256="0ajxf81y3w6r60gj6ybkzqn7qcqrwch1s10nd2jcv7ki4w6vw6kb"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.10.0"; sha256="1xpkdllg9a86pc4fjfiv9a0n8mbiaxyz3ra40v9drwh29skkfpm2"; depends=[affy]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.0.0"; sha256="1jz69nxilwcs9h7hj366dl20fxlblrgvplnjjr091r5jy3a43cvj"; depends=[]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.8.0"; sha256="0vszzx44sppd0gka884fm53al9ljpjl4rrzq7li4w23ndf8sf5ak"; depends=[beadarray GEOquery limma]; };
CCl4 = derive2 { name="CCl4"; version="1.8.0"; sha256="0wmkkvxb2k0x921djf7x08svkm6lxfy00053ba572zk9rgb1pzqf"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.10.0"; sha256="1r9iv4m993nz7rj6z23pclgd4c8j75d5raq2518vjkp1a4prhj4s"; depends=[affy Biobase]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.6.0"; sha256="0dayg8p92ma2bwjn4c342q03z1cmb8xyazr4c8y8pzddrydwaizv"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.6.0"; sha256="045fh1g0m6z47q5smc2x7q3adfxs50fa3ph0k9b3qrkrzfq4dpcb"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.6.0"; sha256="0ixjr4r3rj4q0mhv3nkvl4f9h6a4p0zhb90byri9w9jwskzm41h1"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="0.104.0"; sha256="1k3xk588a6jm4cifpaljciwfhwwgz1f7wigwlsi06mqnxic6d545"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.2.0"; sha256="0whrczwqlni05iifra614mi2s9a9byj8gzi9dzh85947nxvvky67"; depends=[Cardinal]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="1.8.0"; sha256="0f8b7zf90avxl9siz4289m91yp21w4bk5hjw6rpkl2w2wvgcz6a1"; depends=[]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.8.0"; sha256="0n3v9d4dbdwbjr01sn4gbys521wmqsnfdg2hbfs0fhp9kajrh9ya"; depends=[bigmemory]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.8.0"; sha256="08p3n2ds4fxwbh0xp19z7p6qf7p07h87hxlcfnvsf0vzi8ifp146"; depends=[affy hexbin limma qvalue statmod]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.6.0"; sha256="05gbp5gnqmdpc3yk1mbd7vj3phy1kjyimvndrc7ijvnmcg7dzs9m"; depends=[]; };
CopyNumber450kData = derive2 { name="CopyNumber450kData"; version="1.6.0"; sha256="1scg0mij4rpgb4sfk7fzrd3yxryglnj94gv5dgj6k2gw1551xiyh"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.2.0"; sha256="1snbk048xigzskajjcm3ihm0cj9yb57h79ac91cmlpqkac6bvpsg"; depends=[]; };
DLBCL = derive2 { name="DLBCL"; version="1.10.0"; sha256="0nmhm768cpfq8kzhc0x33yqdaw9zi7n0vzgaw2qb1f89dr0bwvm4"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="1.6.1"; sha256="1fd6wsg7v89iknwnpf0ypxwvpz5kl6dzwm74dsrn179fm2wxjqjm"; depends=[GenomicRanges]; };
DREAM4 = derive2 { name="DREAM4"; version="1.6.0"; sha256="1plla7jzqarwcanyb2ss330y9ssmrr6ka6fa6040r1z0y64c12qj"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.6.0"; sha256="18yanbz9nnaxsxgnydvr55xw95aymk2l32fad3xzh2fb1lb3wmqm"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.2.0"; sha256="0cxzw6fb3gwp46j3gc59ygiaghv4wi3dx2dbljbq9f5csnfwdr9y"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.8.0"; sha256="1s50gkjvsradqrjz47xlpzxrl1xad52g07ww75vyrgk0pqdczcgr"; depends=[EBImage]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.6.0"; sha256="1n4nmcynm9g86n33x4ndgja8c1qkk940z9dgl15y47plyc4xx1mv"; depends=[]; };
DvDdata = derive2 { name="DvDdata"; version="1.6.0"; sha256="1vzxlaa5481w70cy9ihmm2xk9hn7l4hwvi663i6fgjc1dzramvql"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="1.0.0"; sha256="19v1vy16ppz1nc9s4586qvsz70d1jq7cx5rj4ravnd6kwvnk12xr"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.8.0"; sha256="0dh37fdd8y2fnr0mf7c8jxizmpgd4xb51l1wyvbrc47iqb068g33"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.6.0"; sha256="1s077sdz9szxzva3js1qcm5p64yy56bxjcxsf474k12n39ax5bx5"; depends=[]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.6.0"; sha256="1q020k3iaf74cipyj4dz3qqi1007nnjhpgqf143axqzl9p7cy9f1"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.6.0"; sha256="0vwdklxshkpsv3wi69j7m1vdjl556zw6hxzak0jcnf60m4hmyxj2"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.8.0"; sha256="1g3jd0wihx2nw5hfjmpv3vgragkgx0nwh3j2f2fl2zdbkiaawf7j"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.6.0"; sha256="1xk67dxwmpiraidfmr1k6qqbfi1fnpzsr35rn4khiwh6frsyvw0d"; depends=[minfi]; };
FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.6.0"; sha256="15f3b6p5gr25pfrnzsd90w9dnajryia66scpd4jfrws8jagccszq"; depends=[IRanges rtracklayer]; };
GGdata = derive2 { name="GGdata"; version="1.8.0"; sha256="1r2kshwi8iajk0rwzkccdw389ffvkzivg82f4bri3xw0sq57fm50"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="0.104.0"; sha256="133myyzjs6ybj0p7vmrz6xbrc21xid50351pyrd2hm8xrry8h7sa"; depends=[]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.6.0"; sha256="1aldm4mjzdfwnfplrr0nd115w9s877xq1glm1lv60y7dbcki0ghd"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.8.0"; sha256="1spphp552kajq80q630bwq9ynjfb0abl97fhkfgqi312xiyz8hs8"; depends=[GWASTools]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.10.0"; sha256="004d5j2pfrjll68qdswpla81vl6n91vq3jq5rqpc4dwsbgxwaziy"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.8.0"; sha256="04s7jdlhls5rzyaczdar8qzln008c97fh5a51mysxw8d53cj2qd9"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.10.0"; sha256="0smdnfvv8gmccxa648lh5smz2cb157bsh823kcwbb49hlm3m1mp9"; depends=[]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.104.0"; sha256="0d3vigzcrdx0jk9bb27xn7zkz61jgfwsljw0xgsncq1r34v3jrmm"; depends=[]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.104.0"; sha256="1l5xlfjlg619acc8sr8c3mm89cyqnkaicscmjbz6iir2zvprx0qm"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.6.0"; sha256="04a9mqs7xfvyk8604g936hrgpfrq26xhi717caf32jh8hl2aaq82"; depends=[]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.6.0"; sha256="1pqahziip8rxmnx2vpylxlfj7g21f051d13f7if4p5wgdkyy1n96"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.8.0"; sha256="042axcyf4g5m5b7yl97x36n69jr3rhir3bxghpxw0xc6cbxq047g"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.6.0"; sha256="10a082khw646qsqalijks35x7if997181phqw66p2gg9iy2pq0w3"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.8.0"; sha256="1p6wh8y51jnz61akk5n03aklph4gh5xbkzy30mnk2gassfgd7psp"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.12.0"; sha256="193q80789jd4afgij6pzw86pccwfg1hyyr88yc5vmvh922g94iw0"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.6.0"; sha256="17xnxqbwv073qsyimhrsssc32xcsi2v3kh4s2qzy8is3snv560ff"; depends=[Biostrings]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.104.0"; sha256="125bhkzjva7xw5zys3ahqr0qig67yms1w37zh86bcf7x2wm88ky2"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.8.0"; sha256="05hzmszj7dpyb6ahkxic7ykxvc57zvdfv844yss4m0a217mymglz"; depends=[Biobase BiocGenerics]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.8.0"; sha256="0884yzyn79sfbr4wbv8vjq5ivvvk21l1r273w2sqbqay41kakrkj"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.2.0"; sha256="12ycbz6iiq0byfvc3f3y9vfafqpskys3wycmjsiym2xscmvhqdnw"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.6.0"; sha256="04srfy56sb015iprc4r634dkabvq44fhhl7i8j9q9llg1bl43q06"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.8.0"; sha256="18alyl6hlcnx5qwakssfwqkl2aigjmcbrvxax3k9h1pvi3hwp2vf"; depends=[Rsamtools]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.8.0"; sha256="0dz9qnnnri2zx8iy1hshyssmq4ry16194n5gbq7j7db9c56i5ymb"; depends=[affy Biobase lumi]; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.8.0"; sha256="0kp9p51v0c3025d74gx64qpyxhgc0rrdp5li0x2jvihyjgd1wz4r"; depends=[affy Biobase]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.8.0"; sha256="0a9mihv039f45n6h8isc834nmckcxhailah5lqmgca6lz7hclnpf"; depends=[Biobase lumi]; };
MEALData = derive2 { name="MEALData"; version="1.0.0"; sha256="19k7fppx41v3lwrbm13d9wni7z1hjaxms14aap00ffwpwzs6f0z5"; depends=[]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.6.0"; sha256="1jq48li4m8ha4alfhqh7aqkrd18sk4fr1qb7vrhahqhb5q7s4vg9"; depends=[];
|