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Diffstat
(limited to 'pkgs/applications/science')
-rw-r--r--
pkgs/applications/science/astronomy/celestia/default.nix
2
-rw-r--r--
pkgs/applications/science/astronomy/gravit/default.nix
4
-rw-r--r--
pkgs/applications/science/biology/ants/default.nix
4
-rw-r--r--
pkgs/applications/science/biology/bamtools/default.nix
2
-rw-r--r--
pkgs/applications/science/biology/bowtie2/default.nix
2
-rw-r--r--
pkgs/applications/science/biology/dcm2niix/default.nix
19
-rw-r--r--
pkgs/applications/science/biology/dssp/default.nix
2
-rw-r--r--
pkgs/applications/science/biology/febio-studio/default.nix
62
-rw-r--r--
pkgs/applications/science/biology/febio-studio/febio-studio-cmake.patch
38
-rw-r--r--
pkgs/applications/science/biology/jbrowse/default.nix
6
-rw-r--r--
pkgs/applications/science/biology/kalign/default.nix
2
-rw-r--r--
pkgs/applications/science/biology/kallisto/default.nix
4
-rw-r--r--
pkgs/applications/science/biology/kent/default.nix
4
-rw-r--r--
pkgs/applications/science/biology/last/default.nix
4
-rw-r--r--
pkgs/applications/science/biology/mrbayes/default.nix
4
-rw-r--r--
pkgs/applications/science/biology/nest/default.nix
5
-rw-r--r--
pkgs/applications/science/biology/neuron/default.nix
6
-rw-r--r--
pkgs/applications/science/biology/paml/default.nix
2
-rw-r--r--
pkgs/applications/science/biology/sratoolkit/default.nix
56
-rw-r--r--
pkgs/applications/science/biology/tandem-aligner/default.nix
67
-rw-r--r--
pkgs/applications/science/chemistry/avogadro2/default.nix
4
-rw-r--r--
pkgs/applications/science/chemistry/cp2k/default.nix
15
-rw-r--r--
pkgs/applications/science/chemistry/gwyddion/default.nix
25
-rw-r--r--
pkgs/applications/science/chemistry/jmol/default.nix
4
-rw-r--r--
pkgs/applications/science/chemistry/marvin/default.nix
10
-rw-r--r--
pkgs/applications/science/chemistry/nwchem/default.nix
12
-rw-r--r--
pkgs/applications/science/chemistry/pymol/default.nix
7
-rw-r--r--
pkgs/applications/science/chemistry/quantum-espresso/default.nix
1
-rw-r--r--
pkgs/applications/science/computer-architecture/accelergy/default.nix
2
-rw-r--r--
pkgs/applications/science/computer-architecture/timeloop/default.nix
4
-rw-r--r--
pkgs/applications/science/electronics/caneda/default.nix
2
-rw-r--r--
pkgs/applications/science/electronics/dataexplorer/default.nix
82
-rw-r--r--
pkgs/applications/science/electronics/diylc/default.nix
2
-rw-r--r--
pkgs/applications/science/electronics/dwfv/default.nix
21
-rw-r--r--
pkgs/applications/science/electronics/flopoco/default.nix
2
-rw-r--r--
pkgs/applications/science/electronics/fped/default.nix
3
-rw-r--r--
pkgs/applications/science/electronics/kicad/default.nix
12
-rw-r--r--
pkgs/applications/science/electronics/kicad/versions.nix
22
-rw-r--r--
pkgs/applications/science/electronics/nanovna-saver/default.nix
9
-rw-r--r--
pkgs/applications/science/electronics/nvc/default.nix
4
-rw-r--r--
pkgs/applications/science/electronics/openroad/default.nix
1
-rw-r--r--
pkgs/applications/science/electronics/picoscope/default.nix
22
-rw-r--r--
pkgs/applications/science/electronics/verilator/default.nix
82
-rw-r--r--
pkgs/applications/science/electronics/xoscope/default.nix
2
-rw-r--r--
pkgs/applications/science/electronics/xyce/default.nix
2
-rw-r--r--
pkgs/applications/science/geometry/tetgen/default.nix
2
-rw-r--r--
pkgs/applications/science/logic/beluga/default.nix
4
-rw-r--r--
pkgs/applications/science/logic/bitwuzla/default.nix
2
-rw-r--r--
pkgs/applications/science/logic/btor2tools/default.nix
14
-rw-r--r--
pkgs/applications/science/logic/coq/default.nix
55
-rw-r--r--
pkgs/applications/science/logic/cryptoverif/default.nix
20
-rw-r--r--
pkgs/applications/science/logic/cvc5/default.nix
6
-rw-r--r--
pkgs/applications/science/logic/elan/default.nix
9
-rw-r--r--
pkgs/applications/science/logic/hol/default.nix
4
-rw-r--r--
pkgs/applications/science/logic/hol_light/0004-Fix-compilation-with-camlp5-7.11.patch
66
-rw-r--r--
pkgs/applications/science/logic/hol_light/default.nix
15
-rw-r--r--
pkgs/applications/science/logic/lean4/default.nix
2
-rw-r--r--
pkgs/applications/science/logic/mcy/default.nix
2
-rw-r--r--
pkgs/applications/science/logic/monosat/default.nix
6
-rw-r--r--
pkgs/applications/science/logic/msat/default.nix
2
-rw-r--r--
pkgs/applications/science/logic/prover9/default.nix
2
-rw-r--r--
pkgs/applications/science/logic/stp/default.nix
38
-rw-r--r--
pkgs/applications/science/logic/symbiyosys/default.nix
62
-rw-r--r--
pkgs/applications/science/logic/tlaplus/default.nix
4
-rw-r--r--
pkgs/applications/science/logic/z3/default.nix
28
-rw-r--r--
pkgs/applications/science/machine-learning/finalfrontier/default.nix
4
-rw-r--r--
pkgs/applications/science/machine-learning/finalfusion-utils/default.nix
4
-rw-r--r--
pkgs/applications/science/machine-learning/sc2-headless/default.nix
2
-rw-r--r--
pkgs/applications/science/math/bcal/default.nix
2
-rw-r--r--
pkgs/applications/science/math/caffe/default.nix
2
-rw-r--r--
pkgs/applications/science/math/cbc/default.nix
2
-rw-r--r--
pkgs/applications/science/math/cplex/default.nix
7
-rw-r--r--
pkgs/applications/science/math/eigenmath/default.nix
6
-rw-r--r--
pkgs/applications/science/math/gap/default.nix
8
-rw-r--r--
pkgs/applications/science/math/getdp/default.nix
7
-rw-r--r--
pkgs/applications/science/math/gfan/default.nix
8
-rw-r--r--
pkgs/applications/science/math/giac/default.nix
39
-rw-r--r--
pkgs/applications/science/math/giac/fix-fltk-guard.patch
28
-rw-r--r--
pkgs/applications/science/math/giac/increase-pari-stack-size.patch
18
-rw-r--r--
pkgs/applications/science/math/giac/remove-old-functional-patterns.patch
294
-rw-r--r--
pkgs/applications/science/math/gurobi/default.nix
4
-rw-r--r--
pkgs/applications/science/math/mathematica/10.nix
132
-rw-r--r--
pkgs/applications/science/math/mathematica/11.nix
146
-rw-r--r--
pkgs/applications/science/math/mathematica/9.nix
118
-rw-r--r--
pkgs/applications/science/math/mathematica/default.nix
8
-rw-r--r--
pkgs/applications/science/math/mathematica/generic.nix
10
-rw-r--r--
pkgs/applications/science/math/mathematica/versions.nix
28
-rw-r--r--
pkgs/applications/science/math/maxima/5.47.0-CVE-2024-34490.patch
86
-rw-r--r--
pkgs/applications/science/math/maxima/default.nix
6
-rw-r--r--
pkgs/applications/science/math/mxnet/default.nix
2
-rw-r--r--
pkgs/applications/science/math/nota/default.nix
2
-rw-r--r--
pkgs/applications/science/math/numworks-epsilon/default.nix
4
-rw-r--r--
pkgs/applications/science/math/ripser/default.nix
19
-rw-r--r--
pkgs/applications/science/math/sage/default.nix
3
-rw-r--r--
pkgs/applications/science/math/sage/patches/disable-singular-doctest.patch
36
-rw-r--r--
pkgs/applications/science/math/sage/patches/silence-linker.patch
27
-rw-r--r--
pkgs/applications/science/math/sage/patches/sphinx-docbuild-subprocesses.patch
10
-rw-r--r--
pkgs/applications/science/math/sage/python-modules/sage-docbuild.nix
2
-rw-r--r--
pkgs/applications/science/math/sage/sage-env.nix
4
-rw-r--r--
pkgs/applications/science/math/sage/sage-src.nix
61
-rw-r--r--
pkgs/applications/science/math/sage/sage-tests.nix
2
-rw-r--r--
pkgs/applications/science/math/sage/sage.nix
2
-rw-r--r--
pkgs/applications/science/math/singular/default.nix
18
-rw-r--r--
pkgs/applications/science/math/wolfram-engine/default.nix
10
-rw-r--r--
pkgs/applications/science/math/wolfram-engine/l10ns.nix
17
-rw-r--r--
pkgs/applications/science/math/wolfram-engine/notebook.nix
2
-rw-r--r--
pkgs/applications/science/math/yacas/default.nix
2
-rw-r--r--
pkgs/applications/science/medicine/dcmtk/default.nix
3
-rw-r--r--
pkgs/applications/science/medicine/xmedcon/default.nix
2
-rw-r--r--
pkgs/applications/science/misc/bada-bib/default.nix
1
-rw-r--r--
pkgs/applications/science/misc/boinc/default.nix
4
-rw-r--r--
pkgs/applications/science/misc/cwltool/default.nix
7
-rw-r--r--
pkgs/applications/science/misc/fityk/default.nix
4
-rw-r--r--
pkgs/applications/science/misc/golly/default.nix
4
-rw-r--r--
pkgs/applications/science/misc/openrefine/default.nix
6
-rw-r--r--
pkgs/applications/science/misc/rink/default.nix
12
-rw-r--r--
pkgs/applications/science/misc/root/default.nix
9
-rw-r--r--
pkgs/applications/science/misc/root/tests/test-thisroot.nix
1
-rw-r--r--
pkgs/applications/science/misc/sasview/xhtml2pdf.nix
33
-rw-r--r--
pkgs/applications/science/misc/simgrid/default.nix
69
-rw-r--r--
pkgs/applications/science/misc/vite/default.nix
2
-rw-r--r--
pkgs/applications/science/molecular-dynamics/lammps/default.nix
18
-rw-r--r--
pkgs/applications/science/networking/sumo/default.nix
4
-rw-r--r--
pkgs/applications/science/physics/elmerfem/default.nix
1
-rw-r--r--
