diff options
author | Peter Simons <simons@cryp.to> | 2015-11-18 12:38:37 +0100 |
---|---|---|
committer | Peter Simons <simons@cryp.to> | 2015-11-18 15:23:46 +0100 |
commit | d7e6a46770bda9be5cc1863aac04004362a7ff06 (patch) | |
tree | e372c10711055dfb574b77ab9283e42c6ada0bd6 /pkgs/development/r-modules | |
parent | a5c168db4ea609c38eaa661ea2c5ca9c3f60622d (diff) |
r-modules: update list of broken builds to avoid Hydra errors
Diffstat (limited to 'pkgs/development/r-modules')
-rw-r--r-- | pkgs/development/r-modules/default.nix | 74 |
1 files changed, 74 insertions, 0 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 7cb36be80383..d09f95bbbcc0 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -764,28 +764,37 @@ let "backShift" # broken build "BAGS" # build is broken "ballgown" # depends on broken package Rsamtools-1.21.8 + "bamdit" "bamsignals" # build is broken + "BANOVA" "bapred" # depends on broken package r-lme4-1.1-9 "bartMachine" # depends on broken package nlopt-2.4.2 "Basic4Cseq" # depends on broken package Rsamtools-1.21.8 + "bayescount" "bayesDem" # depends on broken package nlopt-2.4.2 "bayesLife" # depends on broken package nlopt-2.4.2 + "BayesMed" + "bayesmix" "BayesPeak" # broken build "bayesPop" # depends on broken package nlopt-2.4.2 "Bayesthresh" # depends on broken package nlopt-2.4.2 "bayou" # broken build "baySeq" # broken build + "BaySIC" "BBCAnalyzer" # depends on broken package r-Rsamtools-1.21.18 "BBRecapture" # depends on broken package nlopt-2.4.2 "BCA" # depends on broken package nlopt-2.4.2 "BcDiag" # broken build "BCRANK" # broken build + "bcrypt" "beadarray" # broken build "beadarrayFilter" # broken build "beadarrayMSV" # broken build "beadarraySNP" # broken build "BEAT" # depends on broken package Rsamtools-1.21.8 + "BEDMatrix" # broken build "bedr" # broken build + "BEST" "betr" # broken build "bgmm" # depends on broken package nlopt-2.4.2 "bgx" # depends on broken package affyio-1.37.0 @@ -825,9 +834,11 @@ let "blme" # depends on broken package nlopt-2.4.2 "bmd" # depends on broken package nlopt-2.4.2 "bmem" # depends on broken package nlopt-2.4.2 + "bmeta" # depends on broken package r-R2jags-0.5-7 "BMhyd" # broken build "bnclassify" # broken build "bootnet" # depends on broken package nlopt-2.4.2 + "boral" "boss" # depends on broken package nlopt-2.4.2 "BradleyTerry2" # depends on broken package nlopt-2.4.2 "BrailleR" # broken build @@ -839,6 +850,7 @@ let "BRugs" # build is broken "BSgenome" # depends on broken package Rsamtools-1.21.8 "bsseq" # broken build + "BTSPAS" "BubbleTree" # depends on broken package r-biovizBase-1.17.2 "bumphunter" # depends on broken package Rsamtools-1.21.8 "CADFtest" # depends on broken package nlopt-2.4.2 @@ -863,6 +875,7 @@ let "categoryCompare" # depends on broken package Category-2.35.1 "Causata" # broken build "CCpop" # depends on broken package nlopt-2.4.2 + "CCTpack" "cdcfluview" # broken build "cellHTS2" # depends on broken package Category-2.35.1 "cellHTS" # broken build @@ -893,6 +906,7 @@ let "chromDraw" # broken build "ChromHeatMap" # depends on broken package Rsamtools-1.21.8 "classGraph" # broken build + "classify" "ClassifyR" # broken build "cleanUpdTSeq" # depends on broken package Rsamtools-1.21.8 "cleaver" # broken build @@ -957,6 +971,7 @@ let "CRISPRseek" # depends on broken package Rsamtools-1.21.8 "crlmm" # depends on broken package affyio-1.37.0 "crmn" # broken build + "crmPack" # depends on broken package r-rjags-4-4 "Crossover" # Build Is Broken "CrypticIBDcheck" # depends on broken package nlopt-2.4.2 "CSAR" # broken build @@ -979,7 +994,9 @@ let "dbConnect" # broken build "DBKGrad" # depends on broken package rpanel-1.1-3 "dcGOR" # broken build + "dcmle" "ddCt" # broken build + "DDD" # depends on broken package r-phytools-0.5-00 "ddgraph" # broken build "ddst" # broken build "DECIPHER" # broken build @@ -1036,6 +1053,7 @@ let "dyebias" # broken build "dynlm" # depends on broken package nlopt-2.4.2 "easyanova" # depends on broken package nlopt-2.4.2 + "EasyMARK" "easyRNASeq" # depends on broken package Rsamtools-1.21.8 "EBarrays" # broken build "EBcoexpress" # broken build @@ -1101,6 +1119,7 @@ let "FIACH" # broken build "FindMyFriends" # broken build "FISHalyseR" # broken build + "fishmethods" # depends on broken package r-lme4-1.1-10 "flagme" # depends on broken package mzR-2.3.1 "flipflop" # broken build "flowBeads" # broken build @@ -1112,6 +1131,7 @@ let "flowClust" # broken build "flowCore" # broken build "flowDensity" # depends on broken package nlopt-2.4.2 + "flowDiv" # depends on broken package r-flowCore-1.35.11 "flowFit" # broken build "flowFP" # broken build "flowMatch" # broken build @@ -1142,6 +1162,7 @@ let "fulltext" # broken build "FunciSNP" # depends on broken package snpStats-1.19.0 "FunctionalNetworks" # Build Is Broken + "funcy" # depends on broken package r-car-2.1-0 "fxregime" # depends on broken package nlopt-2.4.2 "gaga" # broken build "gage" # broken build @@ -1156,6 +1177,8 @@ let "gcmr" # depends on broken package nlopt-2.4.2 "gcrma" # depends on broken package affyio-1.37.0 "GDAtools" # depends on broken package nlopt-2.4.2 + "gdtools" # broken build + "gemtc" "GeneAnswers" # broken build "GENE_E" # depends on broken package rhdf5-2.13.1 "GeneExpressionSignature" # depends on broken package annaffy-1.41.1 @@ -1194,6 +1217,7 @@ let "GEOquery" # broken build "GEOsearch" # broken build "GEOsubmission" # depends on broken package affyio-1.37.0 + "GERGM" "gespeR" # depends on broken package Category-2.35.1 "GEWIST" # depends on broken package nlopt-2.4.2 "GExMap" # broken build @@ -1210,6 +1234,7 @@ let "gmapR" # depends on broken package Rsamtools-1.21.8 "gmatrix" # depends on broken package cudatoolkit-5.5.22 "gMCP" # build is broken + "gmum_r" # broken build "GOexpress" # broken build "GOFunction" # build is broken "GOGANPA" # depends on broken package WGCNA-1.47 @@ -1219,6 +1244,7 @@ let "GOSemSim" # Build Is Broken "goseq" # build is broken "GOSim" # depends on broken package topGO-2.21.0 + "Goslate" # depends on broken package r-PythonInR-0.1-2 "GOstats" # depends on broken package AnnotationForge-1.11.3 "GOTHiC" # depends on broken package Rsamtools-1.21.8 "goTools" # build is broken @@ -1270,6 +1296,7 @@ let "HEM" # broken build "heplots" # depends on broken package nlopt-2.4.2 "hiAnnotator" # depends on broken package Rsamtools-1.21.8 + "HiCfeat" # depends on broken package r-GenomeInfoDb-1.5.16 "HiDimMaxStable" # broken build "hierGWAS" "HierO" # Build Is Broken @@ -1283,6 +1310,7 @@ let "HiTC" # depends on broken package Rsamtools-1.21.8 "HLMdiag" # depends on broken package nlopt-2.4.2 "HMMcopy" # broken build + "homomorpheR" # broken build "hopach" # broken build "hpcwld" # broken build "hpoPlot" # broken build @@ -1340,11 +1368,14 @@ let "IsoGene" # depends on broken package affyio-1.37.0 "IsoGeneGUI" # depends on broken package affyio-1.37.0 "ITALICS" # depends on broken package oligo-1.33.0 + "ITEMAN" # depends on broken package r-car-2.1-0 "iteRates" # broken build "iterativeBMA" # broken build "iterpc" # broken build + "IUPS" "IVAS" # depends on broken package nlopt-2.4.2 "ivpack" # depends on broken package nlopt-2.4.2 + "jagsUI" "JAGUAR" # depends on broken package nlopt-2.4.2 "jetset" "jmosaics" # broken build @@ -1362,6 +1393,8 @@ let "ktspair" # broken build "kza" # broken build "kzft" # broken build + "LANDD" # depends on broken package r-GOSemSim-1.27.4 + "LaplaceDeconv" # depends on broken package r-orthopolynom-1.0-5 "lapmix" # broken build "lawn" # depends on broken package V8-0.6 "ldamatch" # broken build @@ -1373,9 +1406,12 @@ let "lessR" # depends on broken package nlopt-2.4.2 "lfe" # build is broken "lgcp" # depends on broken package rpanel-1.1-3 + "Libra" # broken build "limmaGUI" # depends on broken package affyio-1.37.0 "LinRegInteractive" # depends on broken package rpanel-1.1-3 "LiquidAssociation" # build is broken + "lira" + "littler" # broken build "lmdme" # build is broken "lme4" # depends on broken package nlopt-2.4.2 "LMERConvenienceFunctions" # depends on broken package nlopt-2.4.2 @@ -1383,6 +1419,7 @@ let "LMGene" # depends on broken package affyio-1.37.0 "lmSupport" # depends on broken package nlopt-2.4.2 "LogisticDx" # depends on broken package nlopt-2.4.2 + "LOGIT" # depends on broken package r-caret-6.0-58 "logitT" # depends on broken package affyio-1.37.0 "LOLA" # broken build "longpower" # depends on broken package nlopt-2.4.2 @@ -1395,6 +1432,7 @@ let "M3D" # depends on broken package Rsamtools-1.21.8 "maanova" # broken build "macat" # broken build + "maGUI" # depends on broken package r-affy-1.47.1 "maigesPack" # broken build "MAIT" # depends on broken package nlopt-2.4.2 "makecdfenv" # depends on broken package affyio-1.37.0 @@ -1441,8 +1479,10 @@ let "metagene" # depends on broken package Rsamtools-1.21.8 "metagenomeSeq" # broken build "MetaLandSim" # broken build + "metamisc" "metaMix" # build is broken "metaMS" # depends on broken package mzR-2.3.1 + "MetaPath" # depends on broken package r-Biobase-2.29.1 "metaplus" # depends on broken package nlopt-2.4.2 "metaSEM" # depends on broken package OpenMx-2.2.4 "metaSeq" # broken build @@ -1489,6 +1529,7 @@ let "mixlm" # depends on broken package nlopt-2.4.2 "MixMAP" # depends on broken package nlopt-2.4.2 "MLInterfaces" # broken build + "mlma" # depends on broken package r-lme4-1.1-10 "mlmRev" # depends on broken package nlopt-2.4.2 "MLP" # depends on broken package affyio-1.37.0 "MLSeq" # depends on broken package nlopt-2.4.2 @@ -1500,10 +1541,13 @@ let "mmnet" # broken build "MmPalateMiRNA" # depends on broken package affyio-1.37.0 "mogsa" # broken build + "molaR" # depends on broken package r-geomorph-2.1.7-1 "mongolite" # build is broken "monocle" # build is broken "monogeneaGM" # broken build + "MonoPhy" # depends on broken package r-phytools-0.5-00 "MoPS" # broken build + "morse" "mosaic" # depends on broken package nlopt-2.4.2 "mosaics" # broken build "motifbreakR" # depends on broken package r-BSgenome-1.37.5 @@ -1562,6 +1606,7 @@ let "NGScopy" "nhanesA" # broken build "NHPoisson" # depends on broken package nlopt-2.4.2 + "NIPTeR" # depends on broken package r-Rsamtools-1.21.18 "nloptr" # depends on broken package nlopt-2.4.2 "nlsem" # broken build "nlts" # broken build @@ -1587,6 +1632,7 @@ let "opencpu" # broken build "openCyto" # depends on broken package ncdfFlow-2.15.2 "OpenMx" # build is broken + "openssl" "OperaMate" # depends on broken package Category-2.35.1 "oposSOM" # broken build "optBiomarker" # depends on broken package rpanel-1.1-3 @@ -1639,6 +1685,7 @@ let "pcalg" # broken build "pcaMethods" # broken build "PCGSE" # broken build + "pcnetmeta" "pcot2" # broken build "PCpheno" # depends on broken package Category-2.35.1 "PCS" # broken build @@ -1666,6 +1713,7 @@ let "phytools" # broken build "piano" # broken build "PICS" # depends on broken package Rsamtools-1.21.8 + "piecewiseSEM" # depends on broken package r-lme4-1.1-10 "PING" # depends on broken package Rsamtools-1.21.8 "pkgDepTools" # broken build "plateCore" # depends on broken package ncdfFlow-2.15.2 @@ -1693,6 +1741,8 @@ let "PREDA" # broken build "predictionet" # broken build "predictmeans" # depends on broken package nlopt-2.4.2 + "preprocomb" # depends on broken package r-caret-6.0-58 + "prevalence" "pRF" # broken build "prLogistic" # depends on broken package nlopt-2.4.2 "proBAMr" # depends on broken package Rsamtools-1.21.8 @@ -1713,8 +1763,10 @@ let "PSICQUIC" # broken build "ptw" # depends on broken nloptr-1.0.4 "puma" # depends on broken package affyio-1.37.0 + "PurBayes" "purge" # depends on broken package r-lme4-1.1-9 "pvac" # depends on broken package affyio-1.37.0 + "PVAClone" "pvca" # depends on broken package nlopt-2.4.2 "Pviz" # depends on broken package Rsamtools-1.21.8 "PWMEnrich" # broken build @@ -1739,6 +1791,7 @@ let "QuasiSeq" # broken build "QuasR" # depends on broken package Rsamtools-1.21.8 "qusage" # broken build + "R2jags" "R2STATS" # depends on broken package nlopt-2.4.2 "R3CPET" # depends on broken package Rsamtools-1.21.8 "r3Cseq" # depends on broken package Rsamtools-1.21.8 @@ -1769,6 +1822,7 @@ let "rcellminer" # broken build "rCGH" # depends on broken package r-affy-1.47.1 "Rchemcpp" # depends on broken package ChemmineR-2.21.7 + "rchess" # depends on broken package r-V8-0.9 "RchyOptimyx" # broken build "Rcmdr" # depends on broken package nlopt-2.4.2 "RcmdrMisc" # depends on broken package nlopt-2.4.2 @@ -1781,6 +1835,7 @@ let "RcmdrPlugin_EBM" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_EcoVirtual" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_epack" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_Export" # depends on broken package r-Rcmdr-2.2-3 "RcmdrPlugin_EZR" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_FactoMineR" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_HH" # depends on broken package nlopt-2.4.2 @@ -1859,6 +1914,7 @@ let "RIPSeeker" # depends on broken package Rsamtools-1.21.8 "Risa" # depends on broken package affyio-1.37.0 "rjade" # depends on broken package V8-0.6 + "rjags" "rJPSGCS" # build is broken "rLindo" # build is broken "RLRsim" # depends on broken package r-lme4-1.1-9 @@ -1878,6 +1934,7 @@ let "RnaSeqSampleSize" # Build Is Broken "RnavGraph" # build is broken "RnBeads" # depends on broken package Rsamtools-1.21.8 + "rnetcarto" # broken build "Rnits" # depends on broken package affyio-1.37.0 "rNOMADS" # broken build "roar" # depends on broken package Rsamtools-1.21.8 @@ -1904,6 +1961,7 @@ let "rqubic" # broken build "rr" # depends on broken package nlopt-2.4.2 "rRDP" # broken build + "RRreg" # depends on broken package r-lme4-1.1-10 "Rsamtools" # Build Is Broken "RSAP" # build is broken "rsbml" # build is broken @@ -1911,6 +1969,7 @@ let "RSDA" # depends on broken package nlopt-2.4.2 "RSeed" # broken build "rSFFreader" # depends on broken package Rsamtools-1.21.8 + "Rsomoclu" "RStoolbox" # depends on broken package r-caret-6.0-52 "Rsubread" # Build Is Broken "RSVSim" # depends on broken package Rsamtools-1.21.8 @@ -1978,9 +2037,12 @@ let "SeqVarTools" # depends on broken package Rsamtools-1.21.8 "SGSeq" # depends on broken package Rsamtools-1.21.8 "SharpeR" # broken build + "sharx" "shinyMethyl" # depends on broken package Rsamtools-1.21.8 "shinyTANDEM" # depends on broken package rTANDEM-1.9.0 "ShortRead" # depends on broken package Rsamtools-1.21.8 + "Shrinkage" # depends on broken package r-multtest-2.25.2 + "SIBER" "SID" # broken build "sigaR" # broken build "SigCheck" # broken build @@ -1992,9 +2054,11 @@ let "SimBindProfiles" # depends on broken package affyio-1.37.0 "SIM" # broken build "similaRpeak" # depends on broken package Rsamtools-1.21.8 + "simmr" "simpleaffy" # depends on broken package affyio-1.37.0 "simPop" # depends on broken package r-VIM-4.4.1 "SimRAD" # depends on broken package Rsamtools-1.21.8 + "simr" # depends on broken package r-lme4-1.1-10 "SimReg" # broken build "simulatorZ" # broken build "sirt" # depends on broken package nlopt-2.4.2 @@ -2013,6 +2077,7 @@ let "snpStatsWriter" # depends on broken package snpStats-1.19.0 "SNPtools" # depends on broken package Rsamtools-1.21.8 "SOD" # depends on broken package cudatoolkit-5.5.22 + "sodium" # broken build "soGGi" # depends on broken package Rsamtools-1.21.8 "soilphysics" # depends on broken package rpanel-1.1-3 "SomatiCA" # broken build @@ -2022,8 +2087,10 @@ let "SpacePAC" # broken build "spacom" # depends on broken package nlopt-2.4.2 "spade" # broken build + "SparseLearner" # depends on broken package r-qgraph-1.3.1 "spdynmod" # broken build "specificity" # depends on broken package nlopt-2.4.2 + "specmine" # depends on broken package r-caret-6.0-58 "SpeCond" # broken build "SPEM" # broken build "SPIA" # broken build @@ -2045,6 +2112,7 @@ let "staRank" # depends on broken package Category-2.35.1 "Starr" # depends on broken package affyio-1.37.0 "STATegRa" # depends on broken package affyio-1.37.0 + "StatMethRank" "Statomica" # broken build "stcm" # depends on broken package nlopt-2.4.2 "stepp" # depends on broken package nlopt-2.4.2 @@ -2084,8 +2152,10 @@ let "TIN" # depends on broken package WGCNA-1.47 "TitanCNA" # depends on broken package Rsamtools-1.21.8 "TKF" # broken build + "TLBC" # depends on broken package r-caret-6.0-58 "tmle" # broken build "tnam" # depends on broken package r-lme4-1.1-9 + "tolBasis" # depends on broken package r-polynom-1.3-8 "ToPASeq" # depends on broken package Rsamtools-1.21.8 "topGO" # build is broken "topologyGSA" # depends on broken package Rsamtools-1.21.8 @@ -2144,6 +2214,7 @@ let "wgsea" # depends on broken package snpStats-1.19.0 "WideLM" # depends on broken package cudatoolkit-5.5.22 "wikipediatrend" # broken build + "wordbankr" # depends on broken package r-RMySQL-0.10.7 "XBSeq" # broken build "xcms" # depends on broken package mzR-2.3.1 "XDE" # broken build @@ -2152,8 +2223,11 @@ let "xps" # build is broken "XVector" # broken build "yaqcaffy" # depends on broken package affyio-1.37.0 + "ZeligChoice" # depends on broken package r-AER-1.2-4 + "Zelig" # depends on broken package r-AER-1.2-4 "ZeligMultilevel" # depends on broken package nlopt-2.4.2 "zetadiv" # depends on broken package nlopt-2.4.2 + "zoib" ]; otherOverrides = old: new: { |