diff options
author | Peter Simons <simons@cryp.to> | 2015-10-05 11:00:51 +0200 |
---|---|---|
committer | Peter Simons <simons@cryp.to> | 2015-10-05 14:15:41 +0200 |
commit | 7c516259e77a0d6662608fe9a5e4b1ca34a14ad8 (patch) | |
tree | b1e51f83f2b5722fe2063784e123d500a1cf63e7 /pkgs/development/r-modules | |
parent | 470e71abbd669086ff7ccb026bfce046d90c91d3 (diff) |
r-modules: update list of broken packages
Diffstat (limited to 'pkgs/development/r-modules')
-rw-r--r-- | pkgs/development/r-modules/default.nix | 621 |
1 files changed, 621 insertions, 0 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 8163b9915c04..68ed405ad7c2 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -674,15 +674,25 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ "a4Base" # depends on broken package annaffy-1.41.1 + "a4Classif" # broken build + "a4Core" # broken build "a4" # depends on broken package annaffy-1.41.1 + "a4Preproc" # broken build "a4Reporting" # depends on broken package annaffy-1.41.1 + "ABAEnrichment" # broken build + "ABarray" # broken build "abd" # depends on broken package nlopt-2.4.2 + "aCGH" # broken build + "ACME" # broken build "Actigraphy" # Build Is Broken "adabag" # depends on broken package nlopt-2.4.2 "ADaCGH2" # depends on broken package tilingArray-1.47.0 + "adhoc" # broken build "adSplit" # build is broken "AER" # depends on broken package nlopt-2.4.2 "afex" # depends on broken package nlopt-2.4.2 + "AffyCompatible" # broken build + "affycomp" # broken build "affyContam" # depends on broken package affyio-1.37.0 "affycoretools" # depends on broken package affyio-1.37.0 "affy" # depends on broken package affyio-1.37.0 @@ -696,9 +706,13 @@ let "affyQCReport" # depends on broken package affyio-1.37.0 "AffyRNADegradation" # depends on broken package affyio-1.37.0 "AffyTiling" # depends on broken package affyio-1.37.0 + "AGDEX" # broken build "AgiMicroRna" # depends on broken package affyio-1.37.0 "agRee" # depends on broken package nlopt-2.4.2 + "AIMS" # broken build + "ALDEx2" # broken build "aLFQ" # depends on broken package nlopt-2.4.2 + "algstat" # broken build "AllelicImbalance" # depends on broken package Rsamtools-1.21.8 "alr3" # depends on broken package nlopt-2.4.2 "alr4" # depends on broken package nlopt-2.4.2 @@ -706,15 +720,28 @@ let "altcdfenvs" # depends on broken package affyio-1.37.0 "ampliQueso" # depends on broken package Rsamtools-1.21.8 "anacor" # depends on broken package nlopt-2.4.2 + "AnalysisPageServer" # broken build + "animation" # broken build + "anim_plots" # broken build "annaffy" # build is broken "annmap" # depends on broken package Rsamtools-1.21.8 + "annotate" # broken build + "AnnotationDbi" # broken build "AnnotationForge" # Build Is Broken + "AnnotationFuncs" # broken build + "AnnotationHubData" # depends on broken package r-AnnotationForge-1.11.19 "AnnotationHub" # depends on broken package interactiveDisplayBase-1.7.0 + "annotationTools" # broken build + "anota" # broken build "aods3" # depends on broken package nlopt-2.4.2 + "aop" # broken build + "apaTables" # depends on broken package r-car-2.1-0 "apComplex" # build is broken + "apmsWAPP" # broken build "apt" # depends on broken package nlopt-2.4.2 "ArfimaMLM" # depends on broken package nlopt-2.4.2 "arm" # depends on broken package nlopt-2.4.2 + "ArrayBin" # broken build "ArrayExpress" # depends on broken package affyio-1.37.0 "ArrayExpressHTS" # depends on broken package Rsamtools-1.21.8 "arrayMvout" # depends on broken package affyio-1.37.0 @@ -722,68 +749,133 @@ let "ArrayTools" # depends on broken package affyio-1.37.0 "ArrayTV" # depends on broken package affyio-1.37.0 "ARRmNormalization" # Build Is Broken + "ART" # depends on broken package ar-car-2.1-0 "ARTool" # depends on broken package nlopt-2.4.2 + "AssetPricing" # broken build + "AtelieR" # broken build "attract" # depends on broken package AnnotationForge-1.11.3 + "AutoModel" # depends on broken package r-car-2.1-0 + "babel" # broken build "BACA" # depends on broken package Category-2.35.1 + "backShift" # broken build "BAGS" # build is broken "ballgown" # depends on broken package Rsamtools-1.21.8 "bamsignals" # build is broken + "bapred" # depends on broken package r-lme4-1.1-9 "bartMachine" # depends on broken package nlopt-2.4.2 "Basic4Cseq" # depends on broken package Rsamtools-1.21.8 "bayesDem" # depends on broken package nlopt-2.4.2 "bayesLife" # depends on broken package nlopt-2.4.2 + "BayesPeak" # broken build "bayesPop" # depends on broken package nlopt-2.4.2 "Bayesthresh" # depends on broken package nlopt-2.4.2 + "bayou" # broken build + "baySeq" # broken build + "BBCAnalyzer" # depends on broken package r-Rsamtools-1.21.18 "BBRecapture" # depends on broken package nlopt-2.4.2 "BCA" # depends on broken package nlopt-2.4.2 + "BcDiag" # broken build + "BCRANK" # broken build + "beadarray" # broken build + "beadarrayFilter" # broken build + "beadarrayMSV" # broken build + "beadarraySNP" # broken build "BEAT" # depends on broken package Rsamtools-1.21.8 + "bedr" # broken build + "betr" # broken build "bgmm" # depends on broken package nlopt-2.4.2 "bgx" # depends on broken package affyio-1.37.0 + "BicARE" # broken build "BIFIEsurvey" # depends on broken package nlopt-2.4.2 "bigGP" # build is broken "BiGGR" # depends on broken package rsbml-2.27.0 + "bigmemoryExtras" # broken build + "bioassayR" # broken build + "Biobase" # broken build + "BiocCaseStudies" # broken build + "BiocCheck" # broken build + "BiocGenerics" # broken build + "biocGraph" # broken build + "biocViews" # broken build + "bioDist" # broken build "BiodiversityR" # depends on broken package nlopt-2.4.2 + "biomaRt" # broken build + "biomartr" # broken build + "BioMVCClass" # broken build "biomvRCNS" # depends on broken package Rsamtools-1.21.8 + "BioNet" # broken build + "BioSeqClass" # broken build + "Biostrings" # broken build + "biosvd" # broken build "biotools" # depends on broken package rpanel-1.1-3 "biovizBase" # depends on broken package Rsamtools-1.21.8 + "birta" # broken build "birte" # build is broken + "bisectr" # broken build "BiSEp" # depends on broken package GOSemSim-1.27.3 "BiSeq" # depends on broken package Rsamtools-1.21.8 "BitSeq" # depends on broken package Rsamtools-1.21.8 "BLCOP" # depends on broken package Rsymphony-0.1-20 + "blima" # broken build "blmeco" # depends on broken package nlopt-2.4.2 "blme" # depends on broken package nlopt-2.4.2 "bmd" # depends on broken package nlopt-2.4.2 "bmem" # depends on broken package nlopt-2.4.2 + "BMhyd" # broken build + "bnclassify" # broken build "bootnet" # depends on broken package nlopt-2.4.2 "boss" # depends on broken package nlopt-2.4.2 "BradleyTerry2" # depends on broken package nlopt-2.4.2 + "BrailleR" # broken build + "BRAIN" # broken build + "BrainStars" # broken build + "BrowserViz" # broken build + "BrowserVizDemo" # broken build + "brr" # broken build "BRugs" # build is broken "BSgenome" # depends on broken package Rsamtools-1.21.8 + "bsseq" # broken build + "BubbleTree" # depends on broken package r-biovizBase-1.17.2 "bumphunter" # depends on broken package Rsamtools-1.21.8 "CADFtest" # depends on broken package nlopt-2.4.2 "CAFE" # depends on broken package affyio-1.37.0 "CAGEr" # depends on broken package Rsamtools-1.21.8 "cAIC4" # depends on broken package nlopt-2.4.2 "CAMERA" # depends on broken package mzR-2.3.1 + "cancerclass" # broken build "canceR" # depends on broken package Category-2.35.1 + "CancerMutationAnalysis" # broken build "candisc" # depends on broken package nlopt-2.4.2 "carcass" # depends on broken package nlopt-2.4.2 "car" # depends on broken package nlopt-2.4.2 + "Cardinal" # broken build "caret" # depends on broken package nlopt-2.4.2 "caretEnsemble" # depends on broken package nlopt-2.4.2 + "caRpools" # broken build "CARrampsOcl" # depends on broken package OpenCL-0.1-3 "casper" # depends on broken package Rsamtools-1.21.8 + "cate" # broken build "Category" # Build Is Broken "categoryCompare" # depends on broken package Category-2.35.1 + "Causata" # broken build "CCpop" # depends on broken package nlopt-2.4.2 + "cdcfluview" # broken build "cellHTS2" # depends on broken package Category-2.35.1 + "cellHTS" # broken build + "CellNOptR" # broken build "CexoR" # depends on broken package Rsamtools-1.21.8 + "CGHbase" # broken build + "CGHcall" # broken build + "cghMCR" # broken build + "CGHnormaliter" # broken build + "CGHregions" # broken build "ChainLadder" # depends on broken package nlopt-2.4.2 "ChAMP" # depends on broken package affyio-1.37.0 "charm" # depends on broken package affyio-1.37.0 + "ChemmineOB" # broken build "ChemmineR" # Build Is Broken "chimera" # depends on broken package Rsamtools-1.21.8 + "ChIPComp" # depends on broken package r-Rsamtools-1.21.18 "chipenrich" # build is broken "chipPCR" # depends on broken nloptr-1.0.4 "ChIPpeakAnno" # depends on broken package Rsamtools-1.21.8 @@ -793,34 +885,57 @@ let "ChIPseqR" # depends on broken package Rsamtools-1.21.8 "ChIPsim" # depends on broken package Rsamtools-1.21.8 "ChIPXpress" # depends on broken package affyio-1.37.0 + "chroGPS" # broken build + "chromDraw" # broken build "ChromHeatMap" # depends on broken package Rsamtools-1.21.8 + "Claddis" # broken build + "classGraph" # broken build + "ClassifyR" # broken build "cleanUpdTSeq" # depends on broken package Rsamtools-1.21.8 + "cleaver" # broken build + "clere" # broken build "climwin" # depends on broken package nlopt-2.4.2 + "clippda" # broken build "clipper" # depends on broken package Rsamtools-1.21.8 "CLME" # depends on broken package nlopt-2.4.2 "clpAPI" # build is broken "clusterPower" # depends on broken package nlopt-2.4.2 "clusterProfiler" # depends on broken package GOSemSim-1.27.3 "clusterSEs" # depends on broken AER-1.2-4 + "clusterStab" # broken build "ClustGeo" # depends on broken FactoMineR-1.31.3 + "CMA" # broken build "CNEr" # depends on broken package Rsamtools-1.21.8 "cn_farms" # depends on broken package affyio-1.37.0 "cn_mops" # depends on broken package Rsamtools-1.21.8 + "CNORdt" # broken build + "CNORfeeder" # broken build "CNORfuzzy" # depends on broken package nlopt-2.4.2 + "CNORode" # broken build + "CNTools" # broken build + "cnvGSA" # broken build "CNVPanelizer" # depends on broken cn.mops-1.15.1 "CNVrd2" # depends on broken package Rsamtools-1.21.8 "cobindR" # depends on broken package Rsamtools-1.21.8 "CoCiteStats" # Build Is Broken + "codelink" # broken build "CODEX" # depends on broken package Rsamtools-1.21.8 + "cogena" # broken build "COHCAP" # build is broken "colorscience" "coMET" # depends on broken package Rsamtools-1.21.8 + "compcodeR" # broken build + "compendiumdb" # broken build "compEpiTools" # depends on broken package topGO-2.21.0 "CompGO" # depends on broken package Category-2.35.1 "conformal" # depends on broken package nlopt-2.4.2 "ConsensusClusterPlus" # Build Is Broken "conumee" # depends on broken package Rsamtools-1.21.8 + "convert" # broken build + "convevol" # broken build + "copa" # broken build "CopyNumber450k" # depends on broken package Rsamtools-1.21.8 + "copynumber" # broken build "CopywriteR" # depends on broken package Rsamtools-1.21.8 "corHMM" # depends on broken package nlopt-2.4.2 "Cormotif" # depends on broken package affyio-1.37.0 @@ -828,21 +943,44 @@ let "cosmiq" # depends on broken package mzR-2.3.1 "CosmoPhotoz" # depends on broken package nlopt-2.4.2 "CoverageView" # depends on broken package Rsamtools-1.21.8 + "covmat" # depends on broken package r-VIM-4.4.1 + "covr" # broken build + "cp4p" # broken build + "cpgen" # depends on broken package r-pedigreemm-0.3-3 "cplexAPI" # build is broken "cpvSNP" # depends on broken package Rsamtools-1.21.8 + "creditr" # broken build + "CRImage" # broken build "CRISPRseek" # depends on broken package Rsamtools-1.21.8 "crlmm" # depends on broken package affyio-1.37.0 + "crmn" # broken build "Crossover" # Build Is Broken "CrypticIBDcheck" # depends on broken package nlopt-2.4.2 + "CSAR" # broken build "csaw" # depends on broken package Rsamtools-1.21.8 + "ctsem" # depends on broken package r-OpenMx-2.2.6 "cudaBayesreg" # build is broken "cummeRbund" # depends on broken package Rsamtools-1.21.8 + "curvHDR" # broken build "customProDB" # depends on broken package Rsamtools-1.21.8 + "cycle" # broken build + "cytofkit" # broken build + "D2C" # broken build "daff" # depends on broken package V8-0.6 "dagbag" # build is broken "dagLogo" # depends on broken package Rsamtools-1.21.8 "DAMisc" # depends on broken package nlopt-2.4.2 + "DASiR" # broken build + "datafsm" # depends on broken package r-caret-6.0-52 + "DBChIP" # broken build + "dbConnect" # broken build "DBKGrad" # depends on broken package rpanel-1.1-3 + "dcGOR" # broken build + "ddCt" # broken build + "ddgraph" # broken build + "ddst" # broken build + "DECIPHER" # broken build + "DeconRNASeq" # broken build "Deducer" # depends on broken package nlopt-2.4.2 "DeducerExtras" # depends on broken package nlopt-2.4.2 "DeducerPlugInExample" # depends on broken package nlopt-2.4.2 @@ -852,21 +990,34 @@ let "DeducerText" # depends on broken package nlopt-2.4.2 "deepSNV" # depends on broken package Rsamtools-1.21.8 "DEGraph" # depends on broken package RCytoscape-1.19.0 + "DEGreport" # broken build "demi" # depends on broken package affyio-1.37.0 "derfinder" # depends on broken package Rsamtools-1.21.8 + "derfinderHelper" # broken build "derfinderPlot" # depends on broken package Rsamtools-1.21.8 + "DESeq2" # broken build + "DESeq" # broken build + "DESP" # broken build "destiny" # depends on broken package VIM-4.3.0 + "devtools" # broken build "DEXSeq" # depends on broken package Rsamtools-1.21.8 + "dexus" # broken build + "DFP" # broken build "DiagTest3Grp" # depends on broken package nlopt-2.4.2 "DiffBind" # depends on broken package AnnotationForge-1.11.3 + "DiffCorr" # broken build "diffHic" # depends on broken package rhdf5-2.13.1 "difR" # depends on broken package nlopt-2.4.2 + "diggit" # broken build "DirichletMultinomial" # Build Is Broken "discSurv" # depends on broken package nlopt-2.4.2 "DistatisR" # depends on broken package nlopt-2.4.2 "diveRsity" # depends on broken package nlopt-2.4.2 + "DMRcaller" # broken build "DMRcate" # depends on broken package Rsamtools-1.21.8 "DMRforPairs" # depends on broken package Rsamtools-1.21.8 + "dnet" # broken build + "docxtractr" # broken build "domainsignatures" # build is broken "doMPI" # build is broken "DOQTL" # depends on broken package Rsamtools-1.21.8 @@ -877,12 +1028,23 @@ let "drfit" # depends on broken package nlopt-2.4.2 "drsmooth" # depends on broken package nlopt-2.4.2 "DrugVsDisease" # depends on broken package affyio-1.37.0 + "DSS" # broken build "dualKS" # depends on broken package affyio-1.37.0 + "dupRadar" # depends on broken package r-Rsubread-1.19.5 + "dyebias" # broken build "dynlm" # depends on broken package nlopt-2.4.2 "easyanova" # depends on broken package nlopt-2.4.2 "easyRNASeq" # depends on broken package Rsamtools-1.21.8 + "EBarrays" # broken build + "EBcoexpress" # broken build + "EBImage" # broken build + "ecolitk" # broken build "EDASeq" # depends on broken package Rsamtools-1.21.8 + "EDDA" # broken build "edge" # depends on broken package nlopt-2.4.2 + "edgeR" # broken build + "edgeRun" # broken build + "edmr" # broken build "eeptools" # depends on broken package nlopt-2.4.2 "EffectLiteR" # depends on broken package nlopt-2.4.2 "effects" # depends on broken package nlopt-2.4.2 @@ -890,18 +1052,28 @@ let "eisa" # depends on broken package Category-2.35.1 "ELMER" # depends on broken package Rsamtools-1.21.8 "EMA" # depends on broken package nlopt-2.4.2 + "embryogrowth" # broken build + "emg" # broken build + "empiricalFDR_DESeq2" # broken build "ENmix" # depends on broken package affyio-1.37.0 "EnQuireR" # depends on broken package nlopt-2.4.2 + "EnrichedHeatmap" # broken build "EnrichmentBrowser" # depends on broken package r-EDASeq-2.3.2 "ensembldb" # depends on broken package interactiveDisplayBase-1.7.0 "ensemblVEP" # depends on broken package Rsamtools-1.21.8 "epigenomix" # depends on broken package Rsamtools-1.21.8 "episplineDensity" # depends on broken package nlopt-2.4.2 "epivizr" # depends on broken package Rsamtools-1.21.8 + "epoc" # broken build "epr" # depends on broken package nlopt-2.4.2 + "erccdashboard" # broken build "erer" # depends on broken package nlopt-2.4.2 "erma" # depends on broken GenomicFiles-1.5.4 "erpR" # depends on broken package rpanel-1.1-3 + "ESKNN" # depends on broken package r-caret-6.0-52 + "eulerian" # broken build + "evobiR" # broken build + "evolqg" # broken build "ExiMiR" # depends on broken package affyio-1.37.0 "exomeCopy" # depends on broken package Rsamtools-1.21.8 "ExomeDepth" # depends on broken package Rsamtools-1.21.8 @@ -909,68 +1081,138 @@ let "ExpressionView" # depends on broken package Category-2.35.1 "extRemes" # depends on broken package nlopt-2.4.2 "ez" # depends on broken package nlopt-2.4.2 + "fabia" # broken build "facopy" # depends on broken package nlopt-2.4.2 + "factDesign" # broken build "FactoMineR" # depends on broken package nlopt-2.4.2 "Factoshiny" # depends on broken package nlopt-2.4.2 "faoutlier" # depends on broken package nlopt-2.4.2 "farms" # depends on broken package affyio-1.37.0 "fastLiquidAssociation" # depends on broken package LiquidAssociation-1.23.0 "fastR" # depends on broken package nlopt-2.4.2 + "fastseg" # broken build + "fdrDiscreteNull" # broken build "FDRreg" # depends on broken package nlopt-2.4.2 + "FedData" # broken build "FEM" # build is broken "ffpe" # depends on broken package affyio-1.37.0 + "FIACH" # broken build + "FindMyFriends" # broken build + "FISHalyseR" # broken build "flagme" # depends on broken package mzR-2.3.1 + "flipflop" # broken build + "flowBeads" # broken build + "flowBin" # broken build + "flowcatchR" # broken build + "flowCHIC" # broken build + "flowCL" # broken build + "flowClean" # broken build + "flowClust" # broken build + "flowCore" # broken build "flowDensity" # depends on broken package nlopt-2.4.2 + "flowFit" # broken build + "flowFP" # broken build + "flowMatch" # broken build + "flowMeans" # broken build + "flowMerge" # broken build "flowPeaks" # build is broken + "flowQB" # broken build "flowQ" # build is broken "FlowSOM" # depends on broken package ConsensusClusterPlus-1.23.0 "flowStats" # depends on broken package ncdfFlow-2.15.2 + "flowTrans" # broken build + "flowType" # broken build + "flowUtils" # broken build + "flowViz" # broken build "flowVS" # depends on broken package ncdfFlow-2.15.2 "flowWorkspace" # depends on broken package ncdfFlow-2.15.2 "fmcsR" # depends on broken package ChemmineR-2.21.7 + "focalCall" # broken build "FourCSeq" # depends on broken package Rsamtools-1.21.8 "fPortfolio" # depends on broken package Rsymphony-0.1-20 + "fracprolif" # broken build + "FreeSortR" # broken build "freqweights" # depends on broken package nlopt-2.4.2 "frma" # depends on broken package affyio-1.37.0 "frmaTools" # depends on broken package affyio-1.37.0 + "frmqa" # broken build "fscaret" # depends on broken package nlopt-2.4.2 + "fulltext" # broken build "FunciSNP" # depends on broken package snpStats-1.19.0 "FunctionalNetworks" # Build Is Broken "fxregime" # depends on broken package nlopt-2.4.2 + "gaga" # broken build + "gage" # broken build + "gaggle" # broken build "gamclass" # depends on broken package nlopt-2.4.2 "gamlss_demo" # depends on broken package rpanel-1.1-3 "gamm4" # depends on broken package nlopt-2.4.2 + "gaucho" # broken build + "gaussquad" # broken build "gCMAP" # depends on broken package Category-2.35.1 "gCMAPWeb" # depends on broken package Category-2.35.1 "gcmr" # depends on broken package nlopt-2.4.2 "gcrma" # depends on broken package affyio-1.37.0 "GDAtools" # depends on broken package nlopt-2.4.2 + "GeneAnswers" # broken build "GENE_E" # depends on broken package rhdf5-2.13.1 "GeneExpressionSignature" # depends on broken package annaffy-1.41.1 + "genefilter" # broken build + "genefu" # broken build + "GeneMeta" # broken build + "GeneNetworkBuilder" # broken build + "geneplotter" # broken build + "geneRecommender" # broken build + "GeneRegionScan" # broken build + "geneRxCluster" # broken build + "GeneSelectMMD" # broken build + "GeneSelector" # broken build + "GENESIS" # broken build + "geNetClassifier" # broken build "GeneticTools" # depends on broken package snpStats-1.19.0 "genomation" # depends on broken package Rsamtools-1.21.8 + "GenomeGraphs" # broken build + "GenomeInfoDb" # broken build + "genomeIntervals" # broken build + "genomes" # broken build "GenomicAlignments" # depends on broken package Rsamtools-1.21.8 "GenomicFeatures" # depends on broken package Rsamtools-1.21.8 "GenomicFiles" # depends on broken package Rsamtools-1.21.8 "GenomicInteractions" # depends on broken package Rsamtools-1.21.8 + "GenomicRanges" # broken build + "GenomicTuples" # broken build + "Genominator" # broken build + "genoset" # broken build "genotypeeval" # depends on broken package r-rtracklayer-1.29.12 "GenoView" # depends on broken package Rsamtools-1.21.8 "genridge" # depends on broken package nlopt-2.4.2 "geojsonio" # depends on broken package V8-0.6 + "GEOmetadb" # broken build + "geomorph" # broken build + "GEOquery" # broken build + "GEOsearch" # broken build "GEOsubmission" # depends on broken package affyio-1.37.0 "gespeR" # depends on broken package Category-2.35.1 "GEWIST" # depends on broken package nlopt-2.4.2 + "GExMap" # broken build + "gfcanalysis" # broken build "GGBase" # depends on broken package snpStats-1.19.0 "ggbio" # depends on broken package Rsamtools-1.21.8 "GGtools" # depends on broken package snpStats-1.19.0 + "ggtree" # broken build "gimme" # depends on broken package nlopt-2.4.2 "girafe" # depends on broken package Rsamtools-1.21.8 + "gitter" # broken build + "GlobalAncova" # broken build + "globaltest" # broken build "gmapR" # depends on broken package Rsamtools-1.21.8 "gmatrix" # depends on broken package cudatoolkit-5.5.22 "gMCP" # build is broken + "GOexpress" # broken build "GOFunction" # build is broken "GOGANPA" # depends on broken package WGCNA-1.47 "GoogleGenomics" # depends on broken package Rsamtools-1.21.8 + "googlesheets" # broken build "goProfiles" # build is broken "GOSemSim" # Build Is Broken "goseq" # build is broken @@ -978,78 +1220,153 @@ let "GOstats" # depends on broken package AnnotationForge-1.11.3 "GOTHiC" # depends on broken package Rsamtools-1.21.8 "goTools" # build is broken + "GPC" # broken build "gplm" # depends on broken package nlopt-2.4.2 "gputools" # depends on broken package cudatoolkit-5.5.22 + "gQTLBase" # depends on broken package r-GenomicFiles-1.5.8 "gQTLstats" # depends on broken package snpStats-1.19.0 + "gRain" # broken build "granova" # depends on broken package nlopt-2.4.2 + "GraphAT" # broken build + "graph" # broken build + "gRapHD" # broken build "graphicalVAR" # depends on broken package nlopt-2.4.2 + "graphite" # broken build + "GraphPAC" # broken build "GraphPCA" # depends on broken package nlopt-2.4.2 + "gRbase" # broken build + "gRc" # broken build "GreyListChIP" # depends on broken package Rsamtools-1.21.8 + "gridDebug" # broken build + "gridGraphviz" # broken build + "gRim" # broken build "groHMM" # depends on broken package Rsamtools-1.21.8 + "GSAgm" # broken build "GSCA" # depends on broken package rhdf5-2.13.1 + "GSEABase" # broken build + "GSEAlm" # broken build + "gsheet" # broken build + "GSRI" # broken build + "GSVA" # broken build "GUIDE" # depends on broken package rpanel-1.1-3 + "GUIProfiler" # broken build + "Guitar" # depends on broken package r-GenomicAlignments-1.5.18 "Gviz" # depends on broken package Rsamtools-1.21.8 "GWAF" # depends on broken package nlopt-2.4.2 "gwascat" # depends on broken package interactiveDisplayBase-1.7.0 + "GWASTools" # broken build "h2o" # build is broken "h5" # build is broken "h5vc" # depends on broken package rhdf5-2.13.1 + "hapFabia" # broken build "Harshlight" # depends on broken package affyio-1.37.0 + "hasseDiagram" # broken build "hbsae" # depends on broken package nlopt-2.4.2 + "HCsnip" # broken build + "hddplot" # broken build + "HELP" # broken build + "HEM" # broken build "heplots" # depends on broken package nlopt-2.4.2 "hiAnnotator" # depends on broken package Rsamtools-1.21.8 + "HiDimMaxStable" # broken build "hierGWAS" "HierO" # Build Is Broken "highriskzone" + "HilbertCurve" # broken build "HilbertVisGUI" # Build Is Broken "HiPLARM" # Build Is Broken "hiReadsProcessor" # depends on broken package Rsamtools-1.21.8 + "hisse" # broken build "HistDAWass" # depends on broken package nlopt-2.4.2 "HiTC" # depends on broken package Rsamtools-1.21.8 "HLMdiag" # depends on broken package nlopt-2.4.2 + "HMMcopy" # broken build + "hopach" # broken build + "hpcwld" # broken build + "hpoPlot" # broken build "HTqPCR" # depends on broken package affyio-1.37.0 "HTSanalyzeR" # depends on broken package Category-2.35.1 + "HTSCluster" # broken build "HTSeqGenie" # depends on broken package Rsamtools-1.21.8 "htSeqTools" # depends on broken package Rsamtools-1.21.8 + "HTSFilter" # broken build + "hwwntest" # broken build + "HybridMTest" # broken build + "HydeNet" # broken build + "hyperdraw" # broken build + "hypergraph" # broken build "hysteresis" # depends on broken package nlopt-2.4.2 "IATscores" # depends on broken package nlopt-2.4.2 "ibd" # depends on broken package nlopt-2.4.2 "ibh" # build is broken + "iBMQ" # broken build "iccbeta" # depends on broken package nlopt-2.4.2 "IdeoViz" # depends on broken package Rsamtools-1.21.8 + "idiogram" # broken build + "IdMappingAnalysis" # broken build + "IdMappingRetrieval" # broken build + "idm" # broken build "ifaTools" # depends on broken package r-OpenMx-2.2.6 "iFes" # depends on broken package cudatoolkit-5.5.22 "imageHTS" # depends on broken package Category-2.35.1 + "imager" # broken build + "immer" # depends on broken package r-sirt-1.8-9 "immunoClust" # build is broken + "imputeLCMD" # broken build "imputeR" # depends on broken package nlopt-2.4.2 "in2extRemes" # depends on broken package nlopt-2.4.2 "inferference" # depends on broken package nlopt-2.4.2 "influence_ME" # depends on broken package nlopt-2.4.2 "InPAS" # depends on broken package Rsamtools-1.21.8 + "inSilicoDb" # broken build "inSilicoMerging" # build is broken "INSPEcT" # depends on broken GenomicFeatures-1.21.13 "intansv" # depends on broken package Rsamtools-1.21.8 + "IntegratedJM" # broken build "interactiveDisplayBase" # build is broken "interactiveDisplay" # depends on broken package Category-2.35.1 "interplot" # depends on broken arm-1.8-5 + "ioncopy" # broken build + "ionflows" # broken build "IONiseR" # depends on broken rhdf5-2.13.4 + "iPAC" # broken build "iptools" + "IRanges" # broken build + "iRefR" # broken build "IsingFit" # depends on broken package nlopt-2.4.2 + "isobar" # broken build "IsoGene" # depends on broken package affyio-1.37.0 "IsoGeneGUI" # depends on broken package affyio-1.37.0 "ITALICS" # depends on broken package oligo-1.33.0 + "iteRates" # broken build + "iterativeBMA" # broken build + "iterpc" # broken build "IVAS" # depends on broken package nlopt-2.4.2 "ivpack" # depends on broken package nlopt-2.4.2 "JAGUAR" # depends on broken package nlopt-2.4.2 "jetset" + "jmosaics" # broken build "joda" # depends on broken package nlopt-2.4.2 "jomo" # build is broken "js" # depends on broken package V8-0.6 "KANT" # depends on broken package affyio-1.37.0 + "KCsmart" # broken build + "kebabs" # broken build + "KEGGgraph" # broken build "keggorthology" # build is broken "KEGGprofile" # Build Is Broken + "KEGGREST" # broken build + "KoNLP" # broken build + "ktspair" # broken build + "kza" # broken build + "kzft" # broken build + "lapmix" # broken build "lawn" # depends on broken package V8-0.6 + "ldamatch" # broken build + "ldblock" # depends on broken package r-snpStats-1.19.3 + "leapp" # broken build "learnstats" # depends on broken package nlopt-2.4.2 + "LedPred" # broken build "lefse" # build is broken "lessR" # depends on broken package nlopt-2.4.2 "lfe" # build is broken @@ -1065,19 +1382,34 @@ let "lmSupport" # depends on broken package nlopt-2.4.2 "LogisticDx" # depends on broken package nlopt-2.4.2 "logitT" # depends on broken package affyio-1.37.0 + "LOLA" # broken build "longpower" # depends on broken package nlopt-2.4.2 + "LOST" # broken build "LowMACA" # depends on broken package Rsamtools-1.21.8 + "lpNet" # broken build + "LPTime" # broken build "lumi" # depends on broken package affyio-1.37.0 "LVSmiRNA" # depends on broken package affyio-1.37.0 "M3D" # depends on broken package Rsamtools-1.21.8 + "maanova" # broken build + "macat" # broken build + "maigesPack" # broken build "MAIT" # depends on broken package nlopt-2.4.2 "makecdfenv" # depends on broken package affyio-1.37.0 + "MAMA" # broken build + "manta" # broken build "mAPKL" # build is broken "maPredictDSC" # depends on broken package nlopt-2.4.2 + "mar1s" # broken build "marked" # depends on broken package nlopt-2.4.2 + "maSigPro" # broken build "maskBAD" # depends on broken package affyio-1.37.0 + "massiR" # broken build + "matchingMarkets" # broken build "MatrixRider" # depends on broken package DirichletMultinomial-1.11.1 "MaxPro" # depends on broken package nlopt-2.4.2 + "MazamaSpatialUtils" # broken build + "MBASED" # broken build "mbest" # depends on broken package nlopt-2.4.2 "MBmca" # depends on broken nloptr-1.0.4 "mBPCR" # depends on broken package affyio-1.37.0 @@ -1085,112 +1417,207 @@ let "MCRestimate" # build is broken "mdgsa" # build is broken "meboot" # depends on broken package nlopt-2.4.2 + "medflex" # depends on broken package r-car-2.1-0 "mediation" # depends on broken package r-lme4-1.1-8 "MEDIPS" # depends on broken package Rsamtools-1.21.8 "MEDME" # depends on broken package nlopt-2.4.2 + "MEET" # broken build + "MEIGOR" # broken build "MEMSS" # depends on broken package nlopt-2.4.2 + "MergeMaid" # broken build + "merTools" # depends on broken package r-arm-1.8-6 + "MeSHDbi" # broken build "meshr" # depends on broken package Category-2.35.1 + "meta4diag" # broken build + "metaArray" # broken build "Metab" # depends on broken package mzR-2.3.1 + "metabolomics" # broken build + "metabomxtr" # broken build + "metacom" # broken build + "MetaDE" # broken build "metagear" # build is broken "metagene" # depends on broken package Rsamtools-1.21.8 + "metagenomeSeq" # broken build + "MetaLandSim" # broken build "metaMix" # build is broken "metaMS" # depends on broken package mzR-2.3.1 "metaplus" # depends on broken package nlopt-2.4.2 "metaSEM" # depends on broken package OpenMx-2.2.4 + "metaSeq" # broken build "metaseqR" # depends on broken package affyio-1.37.0 "Metatron" # depends on broken package nlopt-2.4.2 + "metaX" # depends on broken package r-CAMERA-1.25.2 + "MethTargetedNGS" # broken build + "methVisual" # broken build "methyAnalysis" # depends on broken package affyio-1.37.0 "MethylAid" # depends on broken package Rsamtools-1.21.8 + "methylMnM" # broken build "methylPipe" # depends on broken package Rsamtools-1.21.8 "MethylSeekR" # depends on broken package Rsamtools-1.21.8 "methylumi" # depends on broken package Rsamtools-1.21.8 + "Mfuzz" # broken build + "MGFM" # broken build + "mGSZ" # broken build "miceadds" # depends on broken package nlopt-2.4.2 "micEconAids" # depends on broken package nlopt-2.4.2 "micEconCES" # depends on broken package nlopt-2.4.2 "micEconSNQP" # depends on broken package nlopt-2.4.2 + "MiChip" # broken build + "microRNA" # broken build "mi" # depends on broken package nlopt-2.4.2 "MigClim" # Build Is Broken "migui" # depends on broken package nlopt-2.4.2 + "MIMOSA" # broken build "MineICA" # depends on broken package AnnotationForge-1.11.3 "minfi" # depends on broken package Rsamtools-1.21.8 "minimist" # depends on broken package V8-0.6 "MinimumDistance" # depends on broken package affyio-1.37.0 + "MiPP" # broken build + "MiRaGE" # broken build "mirIntegrator" # build is broken + "miRLAB" # broken build + "miRNAtap" # broken build + "miRtest" # broken build "missDeaths" "missMDA" # depends on broken package nlopt-2.4.2 "missMethyl" # depends on broken package Rsamtools-1.21.8 "mitoODE" # build is broken "mixAK" # depends on broken package nlopt-2.4.2 + "MixedPoisson" # broken build "mixlm" # depends on broken package nlopt-2.4.2 "MixMAP" # depends on broken package nlopt-2.4.2 + "MLInterfaces" # broken build "mlmRev" # depends on broken package nlopt-2.4.2 "MLP" # depends on broken package affyio-1.37.0 "MLSeq" # depends on broken package nlopt-2.4.2 "mlVAR" # depends on broken package nlopt-2.4.2 + "MM2S" # broken build + "MM2Sdata" # broken build + "MM" # broken build "MMDiff" # depends on broken package AnnotationForge-1.11.3 + "mmnet" # broken build "MmPalateMiRNA" # depends on broken package affyio-1.37.0 + "mogsa" # broken build "mongolite" # build is broken "monocle" # build is broken + "monogeneaGM" # broken build + "MoPS" # broken build "mosaic" # depends on broken package nlopt-2.4.2 + "mosaics" # broken build + "motifbreakR" # depends on broken package r-BSgenome-1.37.5 "MotifDb" # depends on broken package Rsamtools-1.21.8 "motifRG" # depends on broken package Rsamtools-1.21.8 "motifStack" # depends on broken package Rsamtools-1.21.8 "MotIV" # depends on broken package Rsamtools-1.21.8 + "mpoly" # broken build + "mRMRe" # broken build + "msa" # broken build + "msarc" # broken build "MSeasy" # depends on broken package mzR-2.3.1 "MSeasyTkGUI" # depends on broken package mzR-2.3.1 "MSGFgui" # depends on broken package MSGFplus-1.3.0 "MSGFplus" # Build Is Broken + "MSIseq" # broken build "msmsEDA" # depends on broken package affyio-1.37.0 "msmsTests" # depends on broken package affyio-1.37.0 "MSnbase" # depends on broken package affyio-1.37.0 "MSnID" # depends on broken package affyio-1.37.0 "MSstats" # depends on broken package nlopt-2.4.2 + "msSurv" # broken build + "Mulcom" # broken build "multiDimBio" # depends on broken package nlopt-2.4.2 "MultiRR" # depends on broken package nlopt-2.4.2 + "multiscan" # broken build + "multtest" # broken build "muma" # depends on broken package nlopt-2.4.2 "munsellinterpol" + "muscle" # broken build + "mutoss" # broken build "mutossGUI" # build is broken "mvGST" # depends on broken package AnnotationForge-1.11.3 "mvinfluence" # depends on broken package nlopt-2.4.2 + "mvMORPH" # broken build |