r-modules: update list of broken packages

1 files changed, 621 insertions, 0 deletions

diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index 8163b9915c04..68ed405ad7c2 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -674,15 +674,25 @@ let
   # Packages which cannot be installed due to lack of dependencies or other reasons.
   brokenPackages = [
     "a4Base" # depends on broken package annaffy-1.41.1
+    "a4Classif" # broken build
+    "a4Core" # broken build
     "a4" # depends on broken package annaffy-1.41.1
+    "a4Preproc" # broken build
     "a4Reporting" # depends on broken package annaffy-1.41.1
+    "ABAEnrichment" # broken build
+    "ABarray" # broken build
     "abd" # depends on broken package nlopt-2.4.2
+    "aCGH" # broken build
+    "ACME" # broken build
     "Actigraphy" # Build Is Broken
     "adabag" # depends on broken package nlopt-2.4.2
     "ADaCGH2" # depends on broken package tilingArray-1.47.0
+    "adhoc" # broken build
     "adSplit" # build is broken
     "AER" # depends on broken package nlopt-2.4.2
     "afex" # depends on broken package nlopt-2.4.2
+    "AffyCompatible" # broken build
+    "affycomp" # broken build
     "affyContam" # depends on broken package affyio-1.37.0
     "affycoretools" # depends on broken package affyio-1.37.0
     "affy" # depends on broken package affyio-1.37.0
@@ -696,9 +706,13 @@ let
     "affyQCReport" # depends on broken package affyio-1.37.0
     "AffyRNADegradation" # depends on broken package affyio-1.37.0
     "AffyTiling" # depends on broken package affyio-1.37.0
+    "AGDEX" # broken build
     "AgiMicroRna" # depends on broken package affyio-1.37.0
     "agRee" # depends on broken package nlopt-2.4.2
+    "AIMS" # broken build
+    "ALDEx2" # broken build
     "aLFQ" # depends on broken package nlopt-2.4.2
+    "algstat" # broken build
     "AllelicImbalance" # depends on broken package Rsamtools-1.21.8
     "alr3" # depends on broken package nlopt-2.4.2
     "alr4" # depends on broken package nlopt-2.4.2
@@ -706,15 +720,28 @@ let
     "altcdfenvs" # depends on broken package affyio-1.37.0
     "ampliQueso" # depends on broken package Rsamtools-1.21.8
     "anacor" # depends on broken package nlopt-2.4.2
+    "AnalysisPageServer" # broken build
+    "animation" # broken build
+    "anim_plots" # broken build
     "annaffy" # build is broken
     "annmap" # depends on broken package Rsamtools-1.21.8
+    "annotate" # broken build
+    "AnnotationDbi" # broken build
     "AnnotationForge" # Build Is Broken
+    "AnnotationFuncs" # broken build
+    "AnnotationHubData" # depends on broken package r-AnnotationForge-1.11.19
     "AnnotationHub" # depends on broken package interactiveDisplayBase-1.7.0
+    "annotationTools" # broken build
+    "anota" # broken build
     "aods3" # depends on broken package nlopt-2.4.2
+    "aop" # broken build
+    "apaTables" # depends on broken package r-car-2.1-0
     "apComplex" # build is broken
+    "apmsWAPP" # broken build
     "apt" # depends on broken package nlopt-2.4.2
     "ArfimaMLM" # depends on broken package nlopt-2.4.2
     "arm" # depends on broken package nlopt-2.4.2
+    "ArrayBin" # broken build
     "ArrayExpress" # depends on broken package affyio-1.37.0
     "ArrayExpressHTS" # depends on broken package Rsamtools-1.21.8
     "arrayMvout" # depends on broken package affyio-1.37.0
@@ -722,68 +749,133 @@ let
     "ArrayTools" # depends on broken package affyio-1.37.0
     "ArrayTV" # depends on broken package affyio-1.37.0
     "ARRmNormalization" # Build Is Broken
+    "ART" # depends on broken package ar-car-2.1-0
     "ARTool" # depends on broken package nlopt-2.4.2
+    "AssetPricing" # broken build
+    "AtelieR" # broken build
     "attract" # depends on broken package AnnotationForge-1.11.3
+    "AutoModel" # depends on broken package r-car-2.1-0
+    "babel" # broken build
     "BACA" # depends on broken package Category-2.35.1
+    "backShift" # broken build
     "BAGS" # build is broken
     "ballgown" # depends on broken package Rsamtools-1.21.8
     "bamsignals" # build is broken
+    "bapred" # depends on broken package r-lme4-1.1-9
     "bartMachine" # depends on broken package nlopt-2.4.2
     "Basic4Cseq" # depends on broken package Rsamtools-1.21.8
     "bayesDem" # depends on broken package nlopt-2.4.2
     "bayesLife" # depends on broken package nlopt-2.4.2
+    "BayesPeak" # broken build
     "bayesPop" # depends on broken package nlopt-2.4.2
     "Bayesthresh" # depends on broken package nlopt-2.4.2
+    "bayou" # broken build
+    "baySeq" # broken build
+    "BBCAnalyzer" # depends on broken package r-Rsamtools-1.21.18
     "BBRecapture" # depends on broken package nlopt-2.4.2
     "BCA" # depends on broken package nlopt-2.4.2
+    "BcDiag" # broken build
+    "BCRANK" # broken build
+    "beadarray" # broken build
+    "beadarrayFilter" # broken build
+    "beadarrayMSV" # broken build
+    "beadarraySNP" # broken build
     "BEAT" # depends on broken package Rsamtools-1.21.8
+    "bedr" # broken build
+    "betr" # broken build
     "bgmm" # depends on broken package nlopt-2.4.2
     "bgx" # depends on broken package affyio-1.37.0
+    "BicARE" # broken build
     "BIFIEsurvey" # depends on broken package nlopt-2.4.2
     "bigGP" # build is broken
     "BiGGR" # depends on broken package rsbml-2.27.0
+    "bigmemoryExtras" # broken build
+    "bioassayR" # broken build
+    "Biobase" # broken build
+    "BiocCaseStudies" # broken build
+    "BiocCheck" # broken build
+    "BiocGenerics" # broken build
+    "biocGraph" # broken build
+    "biocViews" # broken build
+    "bioDist" # broken build
     "BiodiversityR" # depends on broken package nlopt-2.4.2
+    "biomaRt" # broken build
+    "biomartr" # broken build
+    "BioMVCClass" # broken build
     "biomvRCNS" # depends on broken package Rsamtools-1.21.8
+    "BioNet" # broken build
+    "BioSeqClass" # broken build
+    "Biostrings" # broken build
+    "biosvd" # broken build
     "biotools" # depends on broken package rpanel-1.1-3
     "biovizBase" # depends on broken package Rsamtools-1.21.8
+    "birta" # broken build
     "birte" # build is broken
+    "bisectr" # broken build
     "BiSEp" # depends on broken package GOSemSim-1.27.3
     "BiSeq" # depends on broken package Rsamtools-1.21.8
     "BitSeq" # depends on broken package Rsamtools-1.21.8
     "BLCOP" # depends on broken package Rsymphony-0.1-20
+    "blima" # broken build
     "blmeco" # depends on broken package nlopt-2.4.2
     "blme" # depends on broken package nlopt-2.4.2
     "bmd" # depends on broken package nlopt-2.4.2
     "bmem" # depends on broken package nlopt-2.4.2
+    "BMhyd" # broken build
+    "bnclassify" # broken build
     "bootnet" # depends on broken package nlopt-2.4.2
     "boss" # depends on broken package nlopt-2.4.2
     "BradleyTerry2" # depends on broken package nlopt-2.4.2
+    "BrailleR" # broken build
+    "BRAIN" # broken build
+    "BrainStars" # broken build
+    "BrowserViz" # broken build
+    "BrowserVizDemo" # broken build
+    "brr" # broken build
     "BRugs" # build is broken
     "BSgenome" # depends on broken package Rsamtools-1.21.8
+    "bsseq" # broken build
+    "BubbleTree" # depends on broken package r-biovizBase-1.17.2
     "bumphunter" # depends on broken package Rsamtools-1.21.8
     "CADFtest" # depends on broken package nlopt-2.4.2
     "CAFE" # depends on broken package affyio-1.37.0
     "CAGEr" # depends on broken package Rsamtools-1.21.8
     "cAIC4" # depends on broken package nlopt-2.4.2
     "CAMERA" # depends on broken package mzR-2.3.1
+    "cancerclass" # broken build
     "canceR" # depends on broken package Category-2.35.1
+    "CancerMutationAnalysis" # broken build
     "candisc" # depends on broken package nlopt-2.4.2
     "carcass" # depends on broken package nlopt-2.4.2
     "car" # depends on broken package nlopt-2.4.2
+    "Cardinal" # broken build
     "caret" # depends on broken package nlopt-2.4.2
     "caretEnsemble" # depends on broken package nlopt-2.4.2
+    "caRpools" # broken build
     "CARrampsOcl" # depends on broken package OpenCL-0.1-3
     "casper" # depends on broken package Rsamtools-1.21.8
+    "cate" # broken build
     "Category" # Build Is Broken
     "categoryCompare" # depends on broken package Category-2.35.1
+    "Causata" # broken build
     "CCpop" # depends on broken package nlopt-2.4.2
+    "cdcfluview" # broken build
     "cellHTS2" # depends on broken package Category-2.35.1
+    "cellHTS" # broken build
+    "CellNOptR" # broken build
     "CexoR" # depends on broken package Rsamtools-1.21.8
+    "CGHbase" # broken build
+    "CGHcall" # broken build
+    "cghMCR" # broken build
+    "CGHnormaliter" # broken build
+    "CGHregions" # broken build
     "ChainLadder" # depends on broken package nlopt-2.4.2
     "ChAMP" # depends on broken package affyio-1.37.0
     "charm" # depends on broken package affyio-1.37.0
+    "ChemmineOB" # broken build
     "ChemmineR" # Build Is Broken
     "chimera" # depends on broken package Rsamtools-1.21.8
+    "ChIPComp" # depends on broken package r-Rsamtools-1.21.18
     "chipenrich" # build is broken
     "chipPCR" # depends on broken nloptr-1.0.4
     "ChIPpeakAnno" # depends on broken package Rsamtools-1.21.8
@@ -793,34 +885,57 @@ let
     "ChIPseqR" # depends on broken package Rsamtools-1.21.8
     "ChIPsim" # depends on broken package Rsamtools-1.21.8
     "ChIPXpress" # depends on broken package affyio-1.37.0
+    "chroGPS" # broken build
+    "chromDraw" # broken build
     "ChromHeatMap" # depends on broken package Rsamtools-1.21.8
+    "Claddis" # broken build
+    "classGraph" # broken build
+    "ClassifyR" # broken build
     "cleanUpdTSeq" # depends on broken package Rsamtools-1.21.8
+    "cleaver" # broken build
+    "clere" # broken build
     "climwin" # depends on broken package nlopt-2.4.2
+    "clippda" # broken build
     "clipper" # depends on broken package Rsamtools-1.21.8
     "CLME" # depends on broken package nlopt-2.4.2
     "clpAPI" # build is broken
     "clusterPower" # depends on broken package nlopt-2.4.2
     "clusterProfiler" # depends on broken package GOSemSim-1.27.3
     "clusterSEs" # depends on broken AER-1.2-4
+    "clusterStab" # broken build
     "ClustGeo" # depends on broken FactoMineR-1.31.3
+    "CMA" # broken build
     "CNEr" # depends on broken package Rsamtools-1.21.8
     "cn_farms" # depends on broken package affyio-1.37.0
     "cn_mops" # depends on broken package Rsamtools-1.21.8
+    "CNORdt" # broken build
+    "CNORfeeder" # broken build
     "CNORfuzzy" # depends on broken package nlopt-2.4.2
+    "CNORode" # broken build
+    "CNTools" # broken build
+    "cnvGSA" # broken build
     "CNVPanelizer" # depends on broken cn.mops-1.15.1
     "CNVrd2" # depends on broken package Rsamtools-1.21.8
     "cobindR" # depends on broken package Rsamtools-1.21.8
     "CoCiteStats" # Build Is Broken
+    "codelink" # broken build
     "CODEX" # depends on broken package Rsamtools-1.21.8
+    "cogena" # broken build
     "COHCAP" # build is broken
     "colorscience"
     "coMET" # depends on broken package Rsamtools-1.21.8
+    "compcodeR" # broken build
+    "compendiumdb" # broken build
     "compEpiTools" # depends on broken package topGO-2.21.0
     "CompGO" # depends on broken package Category-2.35.1
     "conformal" # depends on broken package nlopt-2.4.2
     "ConsensusClusterPlus" # Build Is Broken
     "conumee" # depends on broken package Rsamtools-1.21.8
+    "convert" # broken build
+    "convevol" # broken build
+    "copa" # broken build
     "CopyNumber450k" # depends on broken package Rsamtools-1.21.8
+    "copynumber" # broken build
     "CopywriteR" # depends on broken package Rsamtools-1.21.8
     "corHMM" # depends on broken package nlopt-2.4.2
     "Cormotif" # depends on broken package affyio-1.37.0
@@ -828,21 +943,44 @@ let
     "cosmiq" # depends on broken package mzR-2.3.1
     "CosmoPhotoz" # depends on broken package nlopt-2.4.2
     "CoverageView" # depends on broken package Rsamtools-1.21.8
+    "covmat" # depends on broken package r-VIM-4.4.1
+    "covr" # broken build
+    "cp4p" # broken build
+    "cpgen" # depends on broken package r-pedigreemm-0.3-3
     "cplexAPI" # build is broken
     "cpvSNP" # depends on broken package Rsamtools-1.21.8
+    "creditr" # broken build
+    "CRImage" # broken build
     "CRISPRseek" # depends on broken package Rsamtools-1.21.8
     "crlmm" # depends on broken package affyio-1.37.0
+    "crmn" # broken build
     "Crossover" # Build Is Broken
     "CrypticIBDcheck" # depends on broken package nlopt-2.4.2
+    "CSAR" # broken build
     "csaw" # depends on broken package Rsamtools-1.21.8
+    "ctsem" # depends on broken package r-OpenMx-2.2.6
     "cudaBayesreg" # build is broken
     "cummeRbund" # depends on broken package Rsamtools-1.21.8
+    "curvHDR" # broken build
     "customProDB" # depends on broken package Rsamtools-1.21.8
+    "cycle" # broken build
+    "cytofkit" # broken build
+    "D2C" # broken build
     "daff" # depends on broken package V8-0.6
     "dagbag" # build is broken
     "dagLogo" # depends on broken package Rsamtools-1.21.8
     "DAMisc" # depends on broken package nlopt-2.4.2
+    "DASiR" # broken build
+    "datafsm" # depends on broken package r-caret-6.0-52
+    "DBChIP" # broken build
+    "dbConnect" # broken build
     "DBKGrad" # depends on broken package rpanel-1.1-3
+    "dcGOR" # broken build
+    "ddCt" # broken build
+    "ddgraph" # broken build
+    "ddst" # broken build
+    "DECIPHER" # broken build
+    "DeconRNASeq" # broken build
     "Deducer" # depends on broken package nlopt-2.4.2
     "DeducerExtras" # depends on broken package nlopt-2.4.2
     "DeducerPlugInExample" # depends on broken package nlopt-2.4.2
@@ -852,21 +990,34 @@ let
     "DeducerText" # depends on broken package nlopt-2.4.2
     "deepSNV" # depends on broken package Rsamtools-1.21.8
     "DEGraph" # depends on broken package RCytoscape-1.19.0
+    "DEGreport" # broken build
     "demi" # depends on broken package affyio-1.37.0
     "derfinder" # depends on broken package Rsamtools-1.21.8
+    "derfinderHelper" # broken build
     "derfinderPlot" # depends on broken package Rsamtools-1.21.8
+    "DESeq2" # broken build
+    "DESeq" # broken build
+    "DESP" # broken build
     "destiny" # depends on broken package VIM-4.3.0
+    "devtools" # broken build
     "DEXSeq" # depends on broken package Rsamtools-1.21.8
+    "dexus" # broken build
+    "DFP" # broken build
     "DiagTest3Grp" # depends on broken package nlopt-2.4.2
     "DiffBind" # depends on broken package AnnotationForge-1.11.3
+    "DiffCorr" # broken build
     "diffHic" # depends on broken package rhdf5-2.13.1
     "difR" # depends on broken package nlopt-2.4.2
+    "diggit" # broken build
     "DirichletMultinomial" # Build Is Broken
     "discSurv" # depends on broken package nlopt-2.4.2
     "DistatisR" # depends on broken package nlopt-2.4.2
     "diveRsity" # depends on broken package nlopt-2.4.2
+    "DMRcaller" # broken build
     "DMRcate" # depends on broken package Rsamtools-1.21.8
     "DMRforPairs" # depends on broken package Rsamtools-1.21.8
+    "dnet" # broken build
+    "docxtractr" # broken build
     "domainsignatures" # build is broken
     "doMPI" # build is broken
     "DOQTL" # depends on broken package Rsamtools-1.21.8
@@ -877,12 +1028,23 @@ let
     "drfit" # depends on broken package nlopt-2.4.2
     "drsmooth" # depends on broken package nlopt-2.4.2
     "DrugVsDisease" # depends on broken package affyio-1.37.0
+    "DSS" # broken build
     "dualKS" # depends on broken package affyio-1.37.0
+    "dupRadar" # depends on broken package r-Rsubread-1.19.5
+    "dyebias" # broken build
     "dynlm" # depends on broken package nlopt-2.4.2
     "easyanova" # depends on broken package nlopt-2.4.2
     "easyRNASeq" # depends on broken package Rsamtools-1.21.8
+    "EBarrays" # broken build
+    "EBcoexpress" # broken build
+    "EBImage" # broken build
+    "ecolitk" # broken build
     "EDASeq" # depends on broken package Rsamtools-1.21.8
+    "EDDA" # broken build
     "edge" # depends on broken package nlopt-2.4.2
+    "edgeR" # broken build
+    "edgeRun" # broken build
+    "edmr" # broken build
     "eeptools" # depends on broken package nlopt-2.4.2
     "EffectLiteR" # depends on broken package nlopt-2.4.2
     "effects" # depends on broken package nlopt-2.4.2
@@ -890,18 +1052,28 @@ let
     "eisa" # depends on broken package Category-2.35.1
     "ELMER" # depends on broken package Rsamtools-1.21.8
     "EMA" # depends on broken package nlopt-2.4.2
+    "embryogrowth" # broken build
+    "emg" # broken build
+    "empiricalFDR_DESeq2" # broken build
     "ENmix" # depends on broken package affyio-1.37.0
     "EnQuireR" # depends on broken package nlopt-2.4.2
+    "EnrichedHeatmap" # broken build
     "EnrichmentBrowser" # depends on broken package r-EDASeq-2.3.2
     "ensembldb" # depends on broken package interactiveDisplayBase-1.7.0
     "ensemblVEP" # depends on broken package Rsamtools-1.21.8
     "epigenomix" # depends on broken package Rsamtools-1.21.8
     "episplineDensity" # depends on broken package nlopt-2.4.2
     "epivizr" # depends on broken package Rsamtools-1.21.8
+    "epoc" # broken build
     "epr" # depends on broken package nlopt-2.4.2
+    "erccdashboard" # broken build
     "erer" # depends on broken package nlopt-2.4.2
     "erma" # depends on broken GenomicFiles-1.5.4
     "erpR" # depends on broken package rpanel-1.1-3
+    "ESKNN" # depends on broken package r-caret-6.0-52
+    "eulerian" # broken build
+    "evobiR" # broken build
+    "evolqg" # broken build
     "ExiMiR" # depends on broken package affyio-1.37.0
     "exomeCopy" # depends on broken package Rsamtools-1.21.8
     "ExomeDepth" # depends on broken package Rsamtools-1.21.8
@@ -909,68 +1081,138 @@ let
     "ExpressionView" # depends on broken package Category-2.35.1
     "extRemes" # depends on broken package nlopt-2.4.2
     "ez" # depends on broken package nlopt-2.4.2
+    "fabia" # broken build
     "facopy" # depends on broken package nlopt-2.4.2
+    "factDesign" # broken build
     "FactoMineR" # depends on broken package nlopt-2.4.2
     "Factoshiny" # depends on broken package nlopt-2.4.2
     "faoutlier" # depends on broken package nlopt-2.4.2
     "farms" # depends on broken package affyio-1.37.0
     "fastLiquidAssociation" # depends on broken package LiquidAssociation-1.23.0
     "fastR" # depends on broken package nlopt-2.4.2
+    "fastseg" # broken build
+    "fdrDiscreteNull" # broken build
     "FDRreg" # depends on broken package nlopt-2.4.2
+    "FedData" # broken build
     "FEM" # build is broken
     "ffpe" # depends on broken package affyio-1.37.0
+    "FIACH" # broken build
+    "FindMyFriends" # broken build
+    "FISHalyseR" # broken build
     "flagme" # depends on broken package mzR-2.3.1
+    "flipflop" # broken build
+    "flowBeads" # broken build
+    "flowBin" # broken build
+    "flowcatchR" # broken build
+    "flowCHIC" # broken build
+    "flowCL" # broken build
+    "flowClean" # broken build
+    "flowClust" # broken build
+    "flowCore" # broken build
     "flowDensity" # depends on broken package nlopt-2.4.2
+    "flowFit" # broken build
+    "flowFP" # broken build
+    "flowMatch" # broken build
+    "flowMeans" # broken build
+    "flowMerge" # broken build
     "flowPeaks" # build is broken
+    "flowQB" # broken build
     "flowQ" # build is broken
     "FlowSOM" # depends on broken package ConsensusClusterPlus-1.23.0
     "flowStats" # depends on broken package ncdfFlow-2.15.2
+    "flowTrans" # broken build
+    "flowType" # broken build
+    "flowUtils" # broken build
+    "flowViz" # broken build
     "flowVS" # depends on broken package ncdfFlow-2.15.2
     "flowWorkspace" # depends on broken package ncdfFlow-2.15.2
     "fmcsR" # depends on broken package ChemmineR-2.21.7
+    "focalCall" # broken build
     "FourCSeq" # depends on broken package Rsamtools-1.21.8
     "fPortfolio" # depends on broken package Rsymphony-0.1-20
+    "fracprolif" # broken build
+    "FreeSortR" # broken build
     "freqweights" # depends on broken package nlopt-2.4.2
     "frma" # depends on broken package affyio-1.37.0
     "frmaTools" # depends on broken package affyio-1.37.0
+    "frmqa" # broken build
     "fscaret" # depends on broken package nlopt-2.4.2
+    "fulltext" # broken build
     "FunciSNP" # depends on broken package snpStats-1.19.0
     "FunctionalNetworks" # Build Is Broken
     "fxregime" # depends on broken package nlopt-2.4.2
+    "gaga" # broken build
+    "gage" # broken build
+    "gaggle" # broken build
     "gamclass" # depends on broken package nlopt-2.4.2
     "gamlss_demo" # depends on broken package rpanel-1.1-3
     "gamm4" # depends on broken package nlopt-2.4.2
+    "gaucho" # broken build
+    "gaussquad" # broken build
     "gCMAP" # depends on broken package Category-2.35.1
     "gCMAPWeb" # depends on broken package Category-2.35.1
     "gcmr" # depends on broken package nlopt-2.4.2
     "gcrma" # depends on broken package affyio-1.37.0
     "GDAtools" # depends on broken package nlopt-2.4.2
+    "GeneAnswers" # broken build
     "GENE_E" # depends on broken package rhdf5-2.13.1
     "GeneExpressionSignature" # depends on broken package annaffy-1.41.1
+    "genefilter" # broken build
+    "genefu" # broken build
+    "GeneMeta" # broken build
+    "GeneNetworkBuilder" # broken build
+    "geneplotter" # broken build
+    "geneRecommender" # broken build
+    "GeneRegionScan" # broken build
+    "geneRxCluster" # broken build
+    "GeneSelectMMD" # broken build
+    "GeneSelector" # broken build
+    "GENESIS" # broken build
+    "geNetClassifier" # broken build
     "GeneticTools" # depends on broken package snpStats-1.19.0
     "genomation" # depends on broken package Rsamtools-1.21.8
+    "GenomeGraphs" # broken build
+    "GenomeInfoDb" # broken build
+    "genomeIntervals" # broken build
+    "genomes" # broken build
     "GenomicAlignments" # depends on broken package Rsamtools-1.21.8
     "GenomicFeatures" # depends on broken package Rsamtools-1.21.8
     "GenomicFiles" # depends on broken package Rsamtools-1.21.8
     "GenomicInteractions" # depends on broken package Rsamtools-1.21.8
+    "GenomicRanges" # broken build
+    "GenomicTuples" # broken build
+    "Genominator" # broken build
+    "genoset" # broken build
     "genotypeeval" # depends on broken package r-rtracklayer-1.29.12
     "GenoView" # depends on broken package Rsamtools-1.21.8
     "genridge" # depends on broken package nlopt-2.4.2
     "geojsonio" # depends on broken package V8-0.6
+    "GEOmetadb" # broken build
+    "geomorph" # broken build
+    "GEOquery" # broken build
+    "GEOsearch" # broken build
     "GEOsubmission" # depends on broken package affyio-1.37.0
     "gespeR" # depends on broken package Category-2.35.1
     "GEWIST" # depends on broken package nlopt-2.4.2
+    "GExMap" # broken build
+    "gfcanalysis" # broken build
     "GGBase" # depends on broken package snpStats-1.19.0
     "ggbio" # depends on broken package Rsamtools-1.21.8
     "GGtools" # depends on broken package snpStats-1.19.0
+    "ggtree" # broken build
     "gimme" # depends on broken package nlopt-2.4.2
     "girafe" # depends on broken package Rsamtools-1.21.8
+    "gitter" # broken build
+    "GlobalAncova" # broken build
+    "globaltest" # broken build
     "gmapR" # depends on broken package Rsamtools-1.21.8
     "gmatrix" # depends on broken package cudatoolkit-5.5.22
     "gMCP" # build is broken
+    "GOexpress" # broken build
     "GOFunction" # build is broken
     "GOGANPA" # depends on broken package WGCNA-1.47
     "GoogleGenomics" # depends on broken package Rsamtools-1.21.8
+    "googlesheets" # broken build
     "goProfiles" # build is broken
     "GOSemSim" # Build Is Broken
     "goseq" # build is broken
@@ -978,78 +1220,153 @@ let
     "GOstats" # depends on broken package AnnotationForge-1.11.3
     "GOTHiC" # depends on broken package Rsamtools-1.21.8
     "goTools" # build is broken
+    "GPC" # broken build
     "gplm" # depends on broken package nlopt-2.4.2
     "gputools" # depends on broken package cudatoolkit-5.5.22
+    "gQTLBase" # depends on broken package r-GenomicFiles-1.5.8
     "gQTLstats" # depends on broken package snpStats-1.19.0
+    "gRain" # broken build
     "granova" # depends on broken package nlopt-2.4.2
+    "GraphAT" # broken build
+    "graph" # broken build
+    "gRapHD" # broken build
     "graphicalVAR" # depends on broken package nlopt-2.4.2
+    "graphite" # broken build
+    "GraphPAC" # broken build
     "GraphPCA" # depends on broken package nlopt-2.4.2
+    "gRbase" # broken build
+    "gRc" # broken build
     "GreyListChIP" # depends on broken package Rsamtools-1.21.8
+    "gridDebug" # broken build
+    "gridGraphviz" # broken build
+    "gRim" # broken build
     "groHMM" # depends on broken package Rsamtools-1.21.8
+    "GSAgm" # broken build
     "GSCA" # depends on broken package rhdf5-2.13.1
+    "GSEABase" # broken build
+    "GSEAlm" # broken build
+    "gsheet" # broken build
+    "GSRI" # broken build
+    "GSVA" # broken build
     "GUIDE" # depends on broken package rpanel-1.1-3
+    "GUIProfiler" # broken build
+    "Guitar" # depends on broken package r-GenomicAlignments-1.5.18
     "Gviz" # depends on broken package Rsamtools-1.21.8
     "GWAF" # depends on broken package nlopt-2.4.2
     "gwascat" # depends on broken package interactiveDisplayBase-1.7.0
+    "GWASTools" # broken build
     "h2o" # build is broken
     "h5" # build is broken
     "h5vc" # depends on broken package rhdf5-2.13.1
+    "hapFabia" # broken build
     "Harshlight" # depends on broken package affyio-1.37.0
+    "hasseDiagram" # broken build
     "hbsae" # depends on broken package nlopt-2.4.2
+    "HCsnip" # broken build
+    "hddplot" # broken build
+    "HELP" # broken build
+    "HEM" # broken build
     "heplots" # depends on broken package nlopt-2.4.2
     "hiAnnotator" # depends on broken package Rsamtools-1.21.8
+    "HiDimMaxStable" # broken build
     "hierGWAS"
     "HierO" # Build Is Broken
     "highriskzone"
+    "HilbertCurve" # broken build
     "HilbertVisGUI" # Build Is Broken
     "HiPLARM" # Build Is Broken
     "hiReadsProcessor" # depends on broken package Rsamtools-1.21.8
+    "hisse" # broken build
     "HistDAWass" # depends on broken package nlopt-2.4.2
     "HiTC" # depends on broken package Rsamtools-1.21.8
     "HLMdiag" # depends on broken package nlopt-2.4.2
+    "HMMcopy" # broken build
+    "hopach" # broken build
+    "hpcwld" # broken build
+    "hpoPlot" # broken build
     "HTqPCR" # depends on broken package affyio-1.37.0
     "HTSanalyzeR" # depends on broken package Category-2.35.1
+    "HTSCluster" # broken build
     "HTSeqGenie" # depends on broken package Rsamtools-1.21.8
     "htSeqTools" # depends on broken package Rsamtools-1.21.8
+    "HTSFilter" # broken build
+    "hwwntest" # broken build
+    "HybridMTest" # broken build
+    "HydeNet" # broken build
+    "hyperdraw" # broken build
+    "hypergraph" # broken build
     "hysteresis" # depends on broken package nlopt-2.4.2
     "IATscores" # depends on broken package nlopt-2.4.2
     "ibd" # depends on broken package nlopt-2.4.2
     "ibh" # build is broken
+    "iBMQ" # broken build
     "iccbeta" # depends on broken package nlopt-2.4.2
     "IdeoViz" # depends on broken package Rsamtools-1.21.8
+    "idiogram" # broken build
+    "IdMappingAnalysis" # broken build
+    "IdMappingRetrieval" # broken build
+    "idm" # broken build
     "ifaTools" # depends on broken package r-OpenMx-2.2.6
     "iFes" # depends on broken package cudatoolkit-5.5.22
     "imageHTS" # depends on broken package Category-2.35.1
+    "imager" # broken build
+    "immer" # depends on broken package r-sirt-1.8-9
     "immunoClust" # build is broken
+    "imputeLCMD" # broken build
     "imputeR" # depends on broken package nlopt-2.4.2
     "in2extRemes" # depends on broken package nlopt-2.4.2
     "inferference" # depends on broken package nlopt-2.4.2
     "influence_ME" # depends on broken package nlopt-2.4.2
     "InPAS" # depends on broken package Rsamtools-1.21.8
+    "inSilicoDb" # broken build
     "inSilicoMerging" # build is broken
     "INSPEcT" # depends on broken GenomicFeatures-1.21.13
     "intansv" # depends on broken package Rsamtools-1.21.8
+    "IntegratedJM" # broken build
     "interactiveDisplayBase" # build is broken
     "interactiveDisplay" # depends on broken package Category-2.35.1
     "interplot" # depends on broken arm-1.8-5
+    "ioncopy" # broken build
+    "ionflows" # broken build
     "IONiseR" # depends on broken rhdf5-2.13.4
+    "iPAC" # broken build
     "iptools"
+    "IRanges" # broken build
+    "iRefR" # broken build
     "IsingFit" # depends on broken package nlopt-2.4.2
+    "isobar" # broken build
     "IsoGene" # depends on broken package affyio-1.37.0
     "IsoGeneGUI" # depends on broken package affyio-1.37.0
     "ITALICS" # depends on broken package oligo-1.33.0
+    "iteRates" # broken build
+    "iterativeBMA" # broken build
+    "iterpc" # broken build
     "IVAS" # depends on broken package nlopt-2.4.2
     "ivpack" # depends on broken package nlopt-2.4.2
     "JAGUAR" # depends on broken package nlopt-2.4.2
     "jetset"
+    "jmosaics" # broken build
     "joda" # depends on broken package nlopt-2.4.2
     "jomo" # build is broken
     "js" # depends on broken package V8-0.6
     "KANT" # depends on broken package affyio-1.37.0
+    "KCsmart" # broken build
+    "kebabs" # broken build
+    "KEGGgraph" # broken build
     "keggorthology" # build is broken
     "KEGGprofile" # Build Is Broken
+    "KEGGREST" # broken build
+    "KoNLP" # broken build
+    "ktspair" # broken build
+    "kza" # broken build
+    "kzft" # broken build
+    "lapmix" # broken build
     "lawn" # depends on broken package V8-0.6
+    "ldamatch" # broken build
+    "ldblock" # depends on broken package r-snpStats-1.19.3
+    "leapp" # broken build
     "learnstats" # depends on broken package nlopt-2.4.2
+    "LedPred" # broken build
     "lefse" # build is broken
     "lessR" # depends on broken package nlopt-2.4.2
     "lfe" # build is broken
@@ -1065,19 +1382,34 @@ let
     "lmSupport" # depends on broken package nlopt-2.4.2
     "LogisticDx" # depends on broken package nlopt-2.4.2
     "logitT" # depends on broken package affyio-1.37.0
+    "LOLA" # broken build
     "longpower" # depends on broken package nlopt-2.4.2
+    "LOST" # broken build
     "LowMACA" # depends on broken package Rsamtools-1.21.8
+    "lpNet" # broken build
+    "LPTime" # broken build
     "lumi" # depends on broken package affyio-1.37.0
     "LVSmiRNA" # depends on broken package affyio-1.37.0
     "M3D" # depends on broken package Rsamtools-1.21.8
+    "maanova" # broken build
+    "macat" # broken build
+    "maigesPack" # broken build
     "MAIT" # depends on broken package nlopt-2.4.2
     "makecdfenv" # depends on broken package affyio-1.37.0
+    "MAMA" # broken build
+    "manta" # broken build
     "mAPKL" # build is broken
     "maPredictDSC" # depends on broken package nlopt-2.4.2
+    "mar1s" # broken build
     "marked" # depends on broken package nlopt-2.4.2
+    "maSigPro" # broken build
     "maskBAD" # depends on broken package affyio-1.37.0
+    "massiR" # broken build
+    "matchingMarkets" # broken build
     "MatrixRider" # depends on broken package DirichletMultinomial-1.11.1
     "MaxPro" # depends on broken package nlopt-2.4.2
+    "MazamaSpatialUtils" # broken build
+    "MBASED" # broken build
     "mbest" # depends on broken package nlopt-2.4.2
     "MBmca" # depends on broken nloptr-1.0.4
     "mBPCR" # depends on broken package affyio-1.37.0
@@ -1085,112 +1417,207 @@ let
     "MCRestimate" # build is broken
     "mdgsa" # build is broken
     "meboot" # depends on broken package nlopt-2.4.2
+    "medflex" # depends on broken package r-car-2.1-0
     "mediation" # depends on broken package r-lme4-1.1-8
     "MEDIPS" # depends on broken package Rsamtools-1.21.8
     "MEDME" # depends on broken package nlopt-2.4.2
+    "MEET" # broken build
+    "MEIGOR" # broken build
     "MEMSS" # depends on broken package nlopt-2.4.2
+    "MergeMaid" # broken build
+    "merTools" # depends on broken package r-arm-1.8-6
+    "MeSHDbi" # broken build
     "meshr" # depends on broken package Category-2.35.1
+    "meta4diag" # broken build
+    "metaArray" # broken build
     "Metab" # depends on broken package mzR-2.3.1
+    "metabolomics" # broken build
+    "metabomxtr" # broken build
+    "metacom" # broken build
+    "MetaDE" # broken build
     "metagear" # build is broken
     "metagene" # depends on broken package Rsamtools-1.21.8
+    "metagenomeSeq" # broken build
+    "MetaLandSim" # broken build
     "metaMix" # build is broken
     "metaMS" # depends on broken package mzR-2.3.1
     "metaplus" # depends on broken package nlopt-2.4.2
     "metaSEM" # depends on broken package OpenMx-2.2.4
+    "metaSeq" # broken build
     "metaseqR" # depends on broken package affyio-1.37.0
     "Metatron" # depends on broken package nlopt-2.4.2
+    "metaX" # depends on broken package r-CAMERA-1.25.2
+    "MethTargetedNGS" # broken build
+    "methVisual" # broken build
     "methyAnalysis" # depends on broken package affyio-1.37.0
     "MethylAid" # depends on broken package Rsamtools-1.21.8
+    "methylMnM" # broken build
     "methylPipe" # depends on broken package Rsamtools-1.21.8
     "MethylSeekR" # depends on broken package Rsamtools-1.21.8
     "methylumi" # depends on broken package Rsamtools-1.21.8
+    "Mfuzz" # broken build
+    "MGFM" # broken build
+    "mGSZ" # broken build
     "miceadds" # depends on broken package nlopt-2.4.2
     "micEconAids" # depends on broken package nlopt-2.4.2
     "micEconCES" # depends on broken package nlopt-2.4.2
     "micEconSNQP" # depends on broken package nlopt-2.4.2
+    "MiChip" # broken build
+    "microRNA" # broken build
     "mi" # depends on broken package nlopt-2.4.2
     "MigClim" # Build Is Broken
     "migui" # depends on broken package nlopt-2.4.2
+    "MIMOSA" # broken build
     "MineICA" # depends on broken package AnnotationForge-1.11.3
     "minfi" # depends on broken package Rsamtools-1.21.8
     "minimist" # depends on broken package V8-0.6
     "MinimumDistance" # depends on broken package affyio-1.37.0
+    "MiPP" # broken build
+    "MiRaGE" # broken build
     "mirIntegrator" # build is broken
+    "miRLAB" # broken build
+    "miRNAtap" # broken build
+    "miRtest" # broken build
     "missDeaths"
     "missMDA" # depends on broken package nlopt-2.4.2
     "missMethyl" # depends on broken package Rsamtools-1.21.8
     "mitoODE" # build is broken
     "mixAK" # depends on broken package nlopt-2.4.2
+    "MixedPoisson" # broken build
     "mixlm" # depends on broken package nlopt-2.4.2
     "MixMAP" # depends on broken package nlopt-2.4.2
+    "MLInterfaces" # broken build
     "mlmRev" # depends on broken package nlopt-2.4.2
     "MLP" # depends on broken package affyio-1.37.0
     "MLSeq" # depends on broken package nlopt-2.4.2
     "mlVAR" # depends on broken package nlopt-2.4.2
+    "MM2S" # broken build
+    "MM2Sdata" # broken build
+    "MM" # broken build
     "MMDiff" # depends on broken package AnnotationForge-1.11.3
+    "mmnet" # broken build
     "MmPalateMiRNA" # depends on broken package affyio-1.37.0
+    "mogsa" # broken build
     "mongolite" # build is broken
     "monocle" # build is broken
+    "monogeneaGM" # broken build
+    "MoPS" # broken build
     "mosaic" # depends on broken package nlopt-2.4.2
+    "mosaics" # broken build
+    "motifbreakR" # depends on broken package r-BSgenome-1.37.5
     "MotifDb" # depends on broken package Rsamtools-1.21.8
     "motifRG" # depends on broken package Rsamtools-1.21.8
     "motifStack" # depends on broken package Rsamtools-1.21.8
     "MotIV" # depends on broken package Rsamtools-1.21.8
+    "mpoly" # broken build
+    "mRMRe" # broken build
+    "msa" # broken build
+    "msarc" # broken build
     "MSeasy" # depends on broken package mzR-2.3.1
     "MSeasyTkGUI" # depends on broken package mzR-2.3.1
     "MSGFgui" # depends on broken package MSGFplus-1.3.0
     "MSGFplus" # Build Is Broken
+    "MSIseq" # broken build
     "msmsEDA" # depends on broken package affyio-1.37.0
     "msmsTests" # depends on broken package affyio-1.37.0
     "MSnbase" # depends on broken package affyio-1.37.0
     "MSnID" # depends on broken package affyio-1.37.0
     "MSstats" # depends on broken package nlopt-2.4.2
+    "msSurv" # broken build
+    "Mulcom" # broken build
     "multiDimBio" # depends on broken package nlopt-2.4.2
     "MultiRR" # depends on broken package nlopt-2.4.2
+    "multiscan" # broken build
+    "multtest" # broken build
     "muma" # depends on broken package nlopt-2.4.2
     "munsellinterpol"
+    "muscle" # broken build
+    "mutoss" # broken build
     "mutossGUI" # build is broken
     "mvGST" # depends on broken package AnnotationForge-1.11.3
     "mvinfluence" # depends on broken package nlopt-2.4.2
+    "mvMORPH" # broken build