diff options
author | Michel Kuhlmann <michel@kuhlmanns.info> | 2016-01-06 14:06:33 +0100 |
---|---|---|
committer | Peter Simons <simons@cryp.to> | 2016-01-06 21:50:36 +0100 |
commit | 26f80d7a6fc0e3e8142bb1d09f81f755e51710b8 (patch) | |
tree | 2c6c97c14a8293920abc2d476540df0bf6e96d68 /pkgs/development/r-modules | |
parent | 7941e1c457a730e989c5cbb26a793d381dfeab81 (diff) |
r-modules: update list of broken packages
Closes https://github.com/NixOS/nixpkgs/pull/12181.
Diffstat (limited to 'pkgs/development/r-modules')
-rw-r--r-- | pkgs/development/r-modules/default.nix | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index ee3a17fdb3cc..d72f9bca03d1 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -735,6 +735,7 @@ let "aop" # broken build "apaTables" # depends on broken package r-car-2.1-0 "apComplex" # build is broken + "apex" # depends on broken package Biostrings-2.38.2 "apmsWAPP" # broken build "apt" # depends on broken package nlopt-2.4.2 "ArfimaMLM" # depends on broken package nlopt-2.4.2 @@ -752,6 +753,7 @@ let "AssetPricing" # broken build "AtelieR" # broken build "attract" # depends on broken package AnnotationForge-1.11.3 + "auRoc" # depends on broken package rjags-4-4 "AutoModel" # depends on broken package r-car-2.1-0 "babel" # broken build "BACA" # depends on broken package Category-2.35.1 @@ -781,6 +783,7 @@ let "BcDiag" # broken build "BCRANK" # broken build "bcrypt" + "bdynsys" # depends on broken package car-2.1 "beadarray" # broken build "beadarrayFilter" # broken build "beadarrayMSV" # broken build @@ -838,7 +841,9 @@ let "BradleyTerry2" # depends on broken package nlopt-2.4.2 "BrailleR" # broken build "BRAIN" # broken build + "brainGraph" # build is broken "BrainStars" # broken build + "brms" # build is broken "BrowserViz" # broken build "BrowserVizDemo" # broken build "brr" # broken build @@ -929,14 +934,17 @@ let "cnvGSA" # broken build "CNVPanelizer" # depends on broken cn.mops-1.15.1 "CNVrd2" # depends on broken package Rsamtools-1.21.8 + "coalescentMCMC" # depends on broken package Biostrings-2.38.2 "cobindR" # depends on broken package Rsamtools-1.21.8 "CoCiteStats" # Build Is Broken "codelink" # broken build "CODEX" # depends on broken package Rsamtools-1.21.8 + "coefplot" # build is broken "cogena" # broken build "COHCAP" # build is broken "colorscience" "coMET" # depends on broken package Rsamtools-1.21.8 + "CommT" # depends on broken package Biostrings-2.38.2 "compcodeR" # broken build "compendiumdb" # broken build "compEpiTools" # depends on broken package topGO-2.21.0 @@ -947,6 +955,7 @@ let "convert" # broken build "convevol" # broken build "copa" # broken build + "CopulaDTA" # depends on broken package r-rstan-2.8.2 "CopyNumber450k" # depends on broken package Rsamtools-1.21.8 "copynumber" # broken build "CopywriteR" # depends on broken package Rsamtools-1.21.8 @@ -962,6 +971,7 @@ let "cpgen" # depends on broken package r-pedigreemm-0.3-3 "cplexAPI" # build is broken "cpvSNP" # depends on broken package Rsamtools-1.21.8 + "cquad" # depends on broken package car-2.1-1 "creditr" # broken build "CRImage" # broken build "CRISPRseek" # depends on broken package Rsamtools-1.21.8 @@ -1013,6 +1023,7 @@ let "derfinder" # depends on broken package Rsamtools-1.21.8 "derfinderHelper" # broken build "derfinderPlot" # depends on broken package Rsamtools-1.21.8 + "DescribeDisplay" # build is broken "DESeq2" # broken build "DESeq" # broken build "DESP" # broken build @@ -1030,6 +1041,7 @@ let "discSurv" # depends on broken package nlopt-2.4.2 "DistatisR" # depends on broken package nlopt-2.4.2 "diveRsity" # depends on broken package nlopt-2.4.2 + "DJL" # depends on broken package r-car-2.1-0 "DMRcaller" # broken build "DMRcate" # depends on broken package Rsamtools-1.21.8 "DMRforPairs" # depends on broken package Rsamtools-1.21.8 @@ -1056,6 +1068,7 @@ let "EBarrays" # broken build "EBcoexpress" # broken build "EBImage" # broken build + "ecd" # depends on broken package r-polynom-1.3-8 "ecolitk" # broken build "EDASeq" # depends on broken package Rsamtools-1.21.8 "EDDA" # broken build @@ -1090,6 +1103,7 @@ let "erpR" # depends on broken package rpanel-1.1-3 "ESKNN" # depends on broken package r-caret-6.0-52 "eulerian" # broken build + "euroMix" # build is broken "evobiR" # broken build "evolqg" # broken build "ExiMiR" # depends on broken package affyio-1.37.0 @@ -1099,6 +1113,7 @@ let "ExpressionView" # depends on broken package Category-2.35.1 "extRemes" # depends on broken package nlopt-2.4.2 "ez" # depends on broken package nlopt-2.4.2 + "ezec" # depends on broken package drc-2.5 "fabia" # broken build "facopy" # depends on broken package nlopt-2.4.2 "factDesign" # broken build @@ -1156,6 +1171,7 @@ let "frma" # depends on broken package affyio-1.37.0 "frmaTools" # depends on broken package affyio-1.37.0 "frmqa" # broken build + "FSA" # depends on broken package car-2.1-1 "fscaret" # depends on broken package nlopt-2.4.2 "fulltext" # broken build "FunciSNP" # depends on broken package snpStats-1.19.0 @@ -1223,6 +1239,8 @@ let "gfcanalysis" # broken build "GGBase" # depends on broken package snpStats-1.19.0 "ggbio" # depends on broken package Rsamtools-1.21.8 + "ggsubplot" # build is broken + "ggtern" # build is broken "GGtools" # depends on broken package snpStats-1.19.0 "ggtree" # broken build "gimme" # depends on broken package nlopt-2.4.2 @@ -1266,6 +1284,7 @@ let "gRc" # broken build "GreyListChIP" # depends on broken package Rsamtools-1.21.8 "gridDebug" # broken build + "gridGraphics" # build is broken "gridGraphviz" # broken build "gRim" # broken build "groHMM" # depends on broken package Rsamtools-1.21.8 @@ -1333,6 +1352,7 @@ let "iBMQ" # broken build "iccbeta" # depends on broken package nlopt-2.4.2 "iCheck" # depends on broken package r-affy-1.48.0 + "iClick" # depends on broken package rugarch-1.3-6 "IdeoViz" # depends on broken package Rsamtools-1.21.8 "idiogram" # broken build "IdMappingAnalysis" # broken build @@ -1444,6 +1464,7 @@ let "maPredictDSC" # depends on broken package nlopt-2.4.2 "mar1s" # broken build "marked" # depends on broken package nlopt-2.4.2 + "markophylo" # depends on broken package r-Biostrings-2.38.2 "maSigPro" # broken build "maskBAD" # depends on broken package affyio-1.37.0 "massiR" # broken build @@ -1455,6 +1476,7 @@ let "mbest" # depends on broken package nlopt-2.4.2 "MBmca" # depends on broken nloptr-1.0.4 "mBPCR" # depends on broken package affyio-1.37.0 + "mBvs" # build is broken "mcaGUI" # depends on broken package Rsamtools-1.21.8 "MCRestimate" # build is broken "mdgsa" # build is broken @@ -1482,6 +1504,7 @@ let "metagene" # depends on broken package Rsamtools-1.21.8 "metagenomeFeatures" # depends on broken package r-Biobase-2.30.0 "metagenomeSeq" # broken build + "metaheur" # depends on broken package r-preprocomb-0.2.0 "MetaLandSim" # broken build "metamisc" "metaMix" # build is broken @@ -1531,6 +1554,7 @@ let "mitoODE" # build is broken "mixAK" # depends on broken package nlopt-2.4.2 "MixedPoisson" # broken build + "MIXFIM" # build is broken "mixlm" # depends on broken package nlopt-2.4.2 "MixMAP" # depends on broken package nlopt-2.4.2 "MLInterfaces" # broken build @@ -1607,6 +1631,7 @@ let "netbenchmark" # build is broken "netClass" # broken build "nethet" # broken build + "NetPreProc" # depends on broken package graph-1.48.0 "netresponse" # broken build "NetSAM" # broken build "nettools" # depends on broken package WGCNA-1.47 @@ -1631,6 +1656,7 @@ let "oligoClasses" # depends on broken package affyio-1.37.0 "oligo" # depends on broken package affyio-1.37.0 "OmicCircos" # broken build + "omics" # depends on broken package lme4-1.1-10 "OmicsMarkeR" # depends on broken package nlopt-2.4.2 "OncoSimulR" # broken build "oneChannelGUI" # depends on broken package affyio-1.37.0 @@ -1707,7 +1733,9 @@ let "pequod" # depends on broken package nlopt-2.4.2 "PerfMeas" # broken build "PGA" # depends on broken package Rsamtools-1.21.8 + "pglm" # depends on broken package car-2.1-1 "PGSEA" # depends on broken package annaffy-1.41.1 + "phangorn" # depends on broken package Biostrings-2.38.2 "PharmacoGx" "phenoDist" # depends on broken package Category-2.35.1 "phenoTest" # depends on broken package Category-2.35.1 @@ -1716,6 +1744,7 @@ let "phreeqc" # broken build "phylocurve" # depends on broken package nlopt-2.4.2 "phyloseq" # broken build + "PhySortR" # depends on broken package phytools-0.5-10 "phytools" # broken build "piano" # broken build "PICS" # depends on broken package Rsamtools-1.21.8 @@ -1727,6 +1756,7 @@ let "plfMA" # broken build "plgem" # broken build "plier" # depends on broken package affyio-1.37.0 + "plm" # depends on broken package car-2.1-1 "PLPE" # broken build "plrs" # broken build "plsRbeta" # depends on broken package nlopt-2.4.2 @@ -1740,6 +1770,8 @@ let "Polyfit" # broken build "polynom" # broken build "pomp" # depends on broken package nlopt-2.4.2 + "poppr" # depends on broken package Biostrings-2.38.2 + "popprxl" # depends on broken package Biostrings-2.38.2 "ppiPre" # depends on broken package GOSemSim-1.27.3 "ppiStats" # depends on broken package Category-2.35.1 "prada" # broken build @@ -1810,6 +1842,7 @@ let "RAM" # broken build "RamiGO" # depends on broken package RCytoscape-1.19.0 "randPack" # broken build + "RANKS" # depends on broken package graph-1.48.0 "RapidPolygonLookup" # depends on broken package PBSmapping-2.69.76 "RAPIDR" # depends on broken package Rsamtools-1.21.8 "RareVariantVis" # depends on broken VariantAnnotation-1.15.19 @@ -1830,6 +1863,7 @@ let "rCGH" # depends on broken package r-affy-1.47.1 "Rchemcpp" # depends on broken package ChemmineR-2.21.7 "rchess" # depends on broken package r-V8-0.9 + "Rchoice" # depends on broken package car-2.1 "RchyOptimyx" # broken build "Rcmdr" # depends on broken package nlopt-2.4.2 "RcmdrMisc" # depends on broken package nlopt-2.4.2 @@ -1898,6 +1932,7 @@ let "regioneR" # depends on broken package Rsamtools-1.21.8 "regionReport" # depends on broken package Rsamtools-1.21.8 "regRSM" # broken build + "REndo" # depends on broken package AER-1.2-4 "repijson" # depends on broken package V8-0.6 "Repitools" # depends on broken package affyio-1.37.0 "ReportingTools" # depends on broken package Category-2.35.1 @@ -1935,6 +1970,7 @@ let "rminer" # depends on broken package nlopt-2.4.2 "RmiR" # Build Is Broken "Rmosek" # build is broken + "rmumps" # build is broken "RMySQL" # broken build "RNAinteract" # depends on broken package Category-2.35.1 "RNAither" # depends on broken package nlopt-2.4.2 @@ -1979,6 +2015,7 @@ let "RSeed" # broken build "rSFFreader" # depends on broken package Rsamtools-1.21.8 "Rsomoclu" + "rstan" # build is broken "RStoolbox" # depends on broken package r-caret-6.0-52 "Rsubread" # Build Is Broken "RSVSim" # depends on broken package Rsamtools-1.21.8 @@ -2040,6 +2077,7 @@ let "SeqFeatR" # broken build "SeqGrapheR" # Build Is Broken "SeqGSEA" # broken build + "seqHMM" # depends on broken package nloptr-1.0.4 "seqPattern" # broken build "seqplots" # depends on broken package Rsamtools-1.21.8 "seqTools" # build is broken @@ -2112,6 +2150,7 @@ let "spliceR" # depends on broken package Rsamtools-1.21.8 "spliceSites" # broken build "SplicingGraphs" # depends on broken package Rsamtools-1.21.8 + "splm" # depends on broken package car-2.1-1 "spocc" # depends on broken package V8-0.6 "spoccutils" # depends on broken spocc-0.3.0 "spsann" # depends on broken package r-pedometrics-0.6-2 @@ -2142,9 +2181,12 @@ let "Surrogate" # depends on broken package nlopt-2.4.2 "Sushi" # broken build "sva" # broken build + "svglite" # depends on broken package gdtools-0.0.6 "SVM2CRM" # depends on broken package Rsamtools-1.21.8 "sybilSBML" # build is broken "synapter" # depends on broken package affyio-1.37.0 + "synchronicity" # build is broken + "synthpop" # build is broken "systemfit" # depends on broken package nlopt-2.4.2 "systemPipeR" # depends on broken package AnnotationForge-1.11.3 "TargetSearch" # depends on broken package mzR-2.3.1 @@ -2157,12 +2199,14 @@ let "TDMR" # depends on broken package nlopt-2.4.2 "TED" # broken build "TEQC" # depends on broken package Rsamtools-1.21.8 + "TextoMineR" # depends on broken package FactoMineR-1.31.4 "TFBSTools" # depends on broken package DirichletMultinomial-1.11.1 "tigerstats" # depends on broken package nlopt-2.4.2 "tigre" # broken build "tilingArray" # depends on broken package affyio-1.37.0 "timecourse" # broken build "timeSeq" # broken build + "timetree" # depends on broken package Biostrings-2.38.2 "TIN" # depends on broken package WGCNA-1.47 "TitanCNA" # depends on broken package Rsamtools-1.21.8 "TKF" # broken build @@ -2180,6 +2224,7 @@ let "tRanslatome" # depends on broken package GOSemSim-1.27.3 "TransView" # depends on broken package Rsamtools-1.21.8 "traseR" + "treescape" # depends on broken package Biostrings-2.38.2 "triform" # broken build "trigger" # broken build "TriMatch" # depends on broken package nlopt-2.4.2 @@ -2206,6 +2251,7 @@ let "V8" # build is broken "VanillaICE" # depends on broken package affyio-1.37.0 "varComp" # depends on broken package r-lme4-1.1-9 + "varian" # build is broken "variancePartition" # depends on broken package lme4-1.1-8 "VariantAnnotation" # depends on broken package Rsamtools-1.21.8 "VariantFiltering" # depends on broken package Rsamtools-1.21.8 @@ -2223,6 +2269,7 @@ let "wavClusteR" # depends on broken package Rsamtools-1.21.8 "waveTiling" # depends on broken package affyio-1.37.0 "webbioc" # depends on broken package affyio-1.37.0 + "webp" # build is broken "wfe" # depends on broken package nlopt-2.4.2 "WGCNA" # build is broken "wgsea" # depends on broken package snpStats-1.19.0 @@ -2236,6 +2283,7 @@ let "xps" # build is broken "XVector" # broken build "yaqcaffy" # depends on broken package affyio-1.37.0 + "yCrypticRNAs" # depends on broken package biomaRt-2.26.1 "ZeligChoice" # depends on broken package r-AER-1.2-4 "Zelig" # depends on broken package r-AER-1.2-4 "ZeligMultilevel" # depends on broken package nlopt-2.4.2 |