R: Update CRAN and bioconductor packages

1 files changed, 1053 insertions, 837 deletions

diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix
index eca1fda4f6f5..ed205130caec 100644
--- a/pkgs/development/r-modules/cran-packages.nix
+++ b/pkgs/development/r-modules/cran-packages.nix
@@ -4,7 +4,7 @@
 # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix
 
 { self, derive }:
-let derive2 = derive { snapshot = "2019-07-01"; };
+let derive2 = derive { snapshot = "2019-08-05"; };
 in with self; {
   A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; };
   ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; };
@@ -33,14 +33,15 @@ in with self; {
   ADPF = derive2 { name="ADPF"; version="0.0.1"; sha256="1n7302xx77ngvp9i2h582i1mqslzllcdr0bn3pl2zk9jd8k97p7n"; depends=[]; };
   ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; };
   AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; };
-  AER = derive2 { name="AER"; version="1.2-6"; sha256="0x4l8ridghxlqjvq5wyv34yvy8mj5bzjrw9cik7f069q4lnklg35"; depends=[car Formula lmtest sandwich survival zoo]; };
+  AER = derive2 { name="AER"; version="1.2-7"; sha256="14wahf8qwv66rv7wbv53y8rslid140n9n7kcr8nhqw8kcdh5rvis"; depends=[car Formula lmtest sandwich survival zoo]; };
   AF = derive2 { name="AF"; version="0.1.5"; sha256="1r87ra55g0qm2s8cgsmdwck93ia2vr8zfab3in45mxm5xc501xgk"; depends=[data_table drgee ivtools stdReg survival]; };
   AFM = derive2 { name="AFM"; version="1.2.6"; sha256="0yngk3j1wkamqzrwibn2csbn61jbdb872n0gi4d3hyhgilqzwbwf"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph mixtools moments plyr png pracma rgl scales shiny shinyjs sp stringr]; };
   AFheritability = derive2 { name="AFheritability"; version="0.1.0"; sha256="03w0a4z2x539ykyzdxm1mfqkhzz03cg0aqvgi062jrrm5m6f57ix"; depends=[ggplot2 mvtnorm reshape2 shiny]; };
   AGD = derive2 { name="AGD"; version="0.39"; sha256="0hmq684snnffc2v7vmns4ky200a6zh1ggiap03n5cvpb3nlqc6lr"; depends=[gamlss gamlss_dist]; };
-  AGHmatrix = derive2 { name="AGHmatrix"; version="0.0.5"; sha256="015wyvrrry4vfdg6qhjj3phjnrdx9707sp2mpf7fr67n2irc65d5"; depends=[Matrix]; };
+  AGHmatrix = derive2 { name="AGHmatrix"; version="1.0.2"; sha256="0qipqk8p80463hfkbjnkw8ivziqj2xb15l54x52kcgbd9hl4zami"; depends=[Matrix zoo]; };
   AGSDest = derive2 { name="AGSDest"; version="2.3.2"; sha256="0f3qchvdi2n1cr8ipjj332dw8hdza58dvfk21p0c6bhmxzg7f71i"; depends=[ldbounds]; };
   AGread = derive2 { name="AGread"; version="0.2.2"; sha256="08d705fh11ksxijqjlc3ny7rclq7hw12f161h277fjdx71wgn8hp"; depends=[anytime binaryLogic data_table DescTools dplyr GGIR lubridate magrittr rlang seewave stringr]; };
+  AHM = derive2 { name="AHM"; version="1.0.1"; sha256="00r1rn7d64a18rckbxvla5yapqv00p9ajxv72fx7s6p80kfal89w"; depends=[devtools dplyr glmnet Matrix mixexp plgp quadprog tibble tidyr]; };
   AHMbook = derive2 { name="AHMbook"; version="0.1.4"; sha256="1cxyk420pzhh1scagxjmpm328xrcc1mpdrrch92yfgbgx09zkr4c"; depends=[coda plotrix RandomFields raster sp unmarked]; };
   AHR = derive2 { name="AHR"; version="1.5.0"; sha256="0sscw80cz4r1xmdymp9knz0dfans7yzwjwklv7ahafxlflw5527h"; depends=[etm MASS Rcpp RcppArmadillo survival]; };
   AICcmodavg = derive2 { name="AICcmodavg"; version="2.2-2"; sha256="0kpdl31wmwk5i4cqcwlm66c9s0c2b793army9dx50hdgrrzqc0na"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; };
@@ -62,12 +63,13 @@ in with self; {
   AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; };
   AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; };
   AMORE = derive2 { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; };
+  AMPLE = derive2 { name="AMPLE"; version="0.0.1"; sha256="1qgr5672s7w7w34r9392rygnw2mx7fcnkwgk42baf10wl9iflgs2"; depends=[dplyr ggplot2 RColorBrewer shiny shinyjs tidyr]; };
   AMR = derive2 { name="AMR"; version="0.7.1"; sha256="1dgdiaa0xfdgdyaps2mx7xb4zis8rf5npa9cr2lz72nlhh3b0h5h"; depends=[backports crayon data_table dplyr ggplot2 hms knitr microbenchmark rlang scales tidyr]; };
   ANN2 = derive2 { name="ANN2"; version="2.3.2"; sha256="0ib6cs2az0hhfg7vj4dk6fxbwjlc305psqjs188fdya2jrxgq1gs"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; };
   ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; };
   ANOVA_TFNs = derive2 { name="ANOVA.TFNs"; version="1.0"; sha256="0dwspvxj2gzyvxsd9xyhv47n1hjlqa7z9qza4h3hn1xda12vkjly"; depends=[FuzzyNumbers]; };
   ANOVAShiny = derive2 { name="ANOVAShiny"; version="0.1.0"; sha256="1z8wi8c8j3rlchfk1vx101qz1r9j2jl5lfh72y5lqsisqxl2fyyz"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; };
-  ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.3"; sha256="1cmps21lrmk6lh6gx0q9fz2736q7cibfcisvir6hnik3ablv70bn"; depends=[quadprog shiny]; };
+  ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.4"; sha256="0rq4aphjmqrr4pm55vpc8qr4rghqkmlsqsvxzarx3kmr3aqlmqg8"; depends=[quadprog shiny]; };
   APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; };
   APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; };
   APML0 = derive2 { name="APML0"; version="0.9"; sha256="1scvcrcsjgdrq9gfv8qxbd703k76cyk01ml93bcr8j8kiwv05z0f"; depends=[Matrix Rcpp RcppEigen]; };
@@ -104,7 +106,7 @@ in with self; {
   AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; };
   AUtests = derive2 { name="AUtests"; version="0.98"; sha256="0m2nl55qfwfzlf92f43b9q75xqvrlx7qzcz6qlnjbjcr80s0qj9q"; depends=[logistf]; };
   AWR = derive2 { name="AWR"; version="1.11.189"; sha256="0q9ss6cyx8vv85zif5v4s2bkv0amhyvzbs41mjjgmwb1csg53jgd"; depends=[rJava]; };
-  AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.6-1"; sha256="0kp5g9fcjdx5904l6b5l03h80hiqq12xx3jlj67y7w9brr2aj5qr"; depends=[rJava RJDBC]; };
+  AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; };
   AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; };
   AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; };
   AbSim = derive2 { name="AbSim"; version="0.2.6"; sha256="16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"; depends=[ape poweRlaw]; };
@@ -132,7 +134,7 @@ in with self; {
   AdhereR = derive2 { name="AdhereR"; version="0.5"; sha256="0wma06v02k50j0j8j5k1py3y6mwl8q7bsb288gyn67ms9wgv4fb5"; depends=[clipr colourpicker data_table DBI haven highlight knitr lubridate manipulate readODS readxl RMariaDB RSQLite scales shiny shinyjs shinyWidgets V8 viridisLite]; };
   AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; };
   AdvBinomApps = derive2 { name="AdvBinomApps"; version="1.0"; sha256="1cnmn6c2dyl8qfl7g5sqwbjb52psqxzrj1mbm06zak2y1j7j8f49"; depends=[GenBinomApps rootSolve]; };
-  AdvDif4 = derive2 { name="AdvDif4"; version="0.4.18"; sha256="1zcia5n8vb01j6m2hjh5jviyqpzk5f1zk69fryy8jlf5ammmr34f"; depends=[]; };
+  AdvDif4 = derive2 { name="AdvDif4"; version="0.7.18"; sha256="1xdbk7w55cb2fh0mqlyrkdpnglrs55kyvvp32anvf2nw3ssrfmy7"; depends=[]; };
   AeRobiology = derive2 { name="AeRobiology"; version="2.0.1"; sha256="14d5gjx53v2wfij8m4br0k7lfi6x2frc8ny1li4g8c05qv2dvnbb"; depends=[circular data_table dplyr ggplot2 ggvis lubridate plotly scales tidyr writexl zoo]; };
   AggregateR = derive2 { name="AggregateR"; version="0.0.2"; sha256="15gxzs3baa6f1rqwv7s7k6zybx0za1mpzc7db1n47jy9rbh2yxb2"; depends=[dummy]; };
   AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; };
@@ -155,7 +157,7 @@ in with self; {
   AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; };
   AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; };
   AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.3.0"; sha256="1aps8fnh2d4vw5c9ypmgqnvwqzkjjfrmm7wq4xcy6lmlqks35zdv"; depends=[mvtnorm Rcpp]; };
-  AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-19"; sha256="0bhx82arwbazbnvpdmqcnnb502hxzv9zbl16z070p4vfkf0mincl"; depends=[fastICA R_matlab tkrplot]; };
+  AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-20"; sha256="1r2w6wf44p75r5m2hflnk1q71kv4vgds4hxyl5viyl6mg417brg5"; depends=[fastICA R_matlab tkrplot]; };
   AnalyzeTS = derive2 { name="AnalyzeTS"; version="2.2"; sha256="0ll4g8yzxhricz56vin8hhyplrmvjmkwfldya41vz6y6bwhywnmb"; depends=[MASS TSA tseries TTR urca]; };
   AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; };
   AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; };
@@ -164,7 +166,7 @@ in with self; {
   AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; };
   AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; };
   AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; };
-  AnthropMMD = derive2 { name="AnthropMMD"; version="2.5.3"; sha256="03xgnpzy6acb8zrhspjlv75vq46cbiprsm0vy2slcn7665axa60x"; depends=[scatterplot3d shiny smacof]; };
+  AnthropMMD = derive2 { name="AnthropMMD"; version="3.0.1"; sha256="0f2j4nwni87r11zav4lvy0c8k9v6yrk2li3vls2xa02nlci64x26"; depends=[plotrix scatterplot3d shiny smacof]; };
   Anthropometry = derive2 { name="Anthropometry"; version="1.12"; sha256="1m9ynypl5hyyqqmknd9hgys927bsglhg3l9rydy36l7lk1kf2m9m"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; };
   Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; };
   ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; };
@@ -186,6 +188,7 @@ in with self; {
   AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; };
   AssocTests = derive2 { name="AssocTests"; version="0.0-4"; sha256="1fhqzbj4aj4srkiba79w8wdyc7yy701izklxqqa7lsifnca6gn4j"; depends=[cluster combinat fExtremes mvtnorm]; };
   AssotesteR = derive2 { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; };
+  AsyK = derive2 { name="AsyK"; version="0.1.0"; sha256="0m3byaa39m9d8l3pcbjxczvwc395wq5rj55qd7afmnj9a5zhgnaq"; depends=[]; };
   AsynchLong = derive2 { name="AsynchLong"; version="2.0"; sha256="1wjby75rpypzyrxnv2lgl7h2fsvyni3bpiwclp0x7cl4sxic1x5c"; depends=[]; };
   AtelieR = derive2 { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58xg9wvqcril8j8yd61lkkmz4b3195zai"; depends=[cairoDevice gWidgetsRGtk2 partitions proto]; };
   AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; };
@@ -198,13 +201,12 @@ in with self; {
   Autoplotprotein = derive2 { name="Autoplotprotein"; version="1.1"; sha256="13mxqmhhdiq7mz4m6nx39dsq7x3bm8fsgskswx48vsq6x2k6byxa"; depends=[ade4 plotrix plyr seqinr XML]; };
   AutoregressionMDE = derive2 { name="AutoregressionMDE"; version="1.0"; sha256="1dmg0q4sp2d2anzhw2my8xjhpyjsx0kf7r202q5bkw8yr57jnhvr"; depends=[]; };
   AzureAuth = derive2 { name="AzureAuth"; version="1.1.1"; sha256="0lamvfgdf1yc8p1v6q83i9j08s4h0657vzma0b0k7999xn60ffry"; depends=[httr jose jsonlite openssl R6 rappdirs]; };
-  AzureContainers = derive2 { name="AzureContainers"; version="1.0.2"; sha256="0ixyqcs0l90sqlfgkykl6bzp4fs6ba4d8w6d39irbn0kq4rbp3h1"; depends=[AzureAuth AzureGraph AzureRMR httr openssl R6]; };
-  AzureGraph = derive2 { name="AzureGraph"; version="1.0.2"; sha256="0c4p3zk7q7nx85zzpsfxrlnzq2ic45j6i6dqqq9yfvk17lf4vysb"; depends=[AzureAuth httr jsonlite openssl R6]; };
-  AzureKeyVault = derive2 { name="AzureKeyVault"; version="1.0.0"; sha256="078m23a7fcvljm7a7za6krnqifbmsapirr3sdg05h92fknj4ajgk"; depends=[AzureAuth AzureGraph AzureRMR httr jose jsonlite openssl R6]; };
-  AzureKusto = derive2 { name="AzureKusto"; version="1.0.1"; sha256="0xmsdvsqq2ccvxfjgz95xgn1z3f8m9avki5ljyx35772fcjdbkqs"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; };
-  AzureML = derive2 { name="AzureML"; version="0.2.14"; sha256="1jhlbgfm3mr772hdkfi8jbv5lw8a08yb49sqaa14m1nz4ar9rckv"; depends=[base64enc codetools curl foreign jsonlite miniCRAN uuid]; };
-  AzureRMR = derive2 { name="AzureRMR"; version="2.1.2"; sha256="01rp6kjyzlbmhl0g2lwzn3lafm0dl06sh87vg37zn6vr01jcc4sw"; depends=[AzureAuth httr jsonlite R6 uuid]; };
-  AzureStor = derive2 { name="AzureStor"; version="2.0.2"; sha256="16wf5m5pzhph0hcbyvb16lxikllj67wk6sbrmkl9gpif6g7nvbyc"; depends=[AzureRMR httr mime openssl R6 xml2]; };
+  AzureContainers = derive2 { name="AzureContainers"; version="1.1.0"; sha256="0c6xq47k4mggnc7id4xkzc4cznsg8b0aam6iymk587727a6rw1jw"; depends=[AzureAuth AzureGraph AzureRMR httr openssl R6]; };
+  AzureGraph = derive2 { name="AzureGraph"; version="1.0.3"; sha256="0klfdx89rqx69qkvkyf8xbvy4x2ximlb5yav6l2jmcfaw739vdyh"; depends=[AzureAuth httr jsonlite openssl R6]; };
+  AzureKeyVault = derive2 { name="AzureKeyVault"; version="1.0.1"; sha256="0vchsn7pcsbw6xq1v4qslaysaq1pwirsjmkv2w8skvhbjdxc84km"; depends=[AzureAuth AzureGraph AzureRMR httr jose jsonlite openssl R6]; };
+  AzureKusto = derive2 { name="AzureKusto"; version="1.0.2"; sha256="08vac33zh3nz3iwgp8npvzjzxz6g8n1r8pami35zj5a71g4mrw36"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; };
+  AzureRMR = derive2 { name="AzureRMR"; version="2.1.3"; sha256="0r801kn46s64i9a3gdpaciaai6wsz9sk9r4ira1x8wgm4w7m25q1"; depends=[AzureAuth httr jsonlite R6 uuid]; };
+  AzureStor = derive2 { name="AzureStor"; version="2.1.0"; sha256="098pldcvwh5yqfl9xxmdh9wbpisxbmazi9fppncvisj9i6pw2n8w"; depends=[AzureRMR httr mime openssl R6 xml2]; };
   AzureVM = derive2 { name="AzureVM"; version="2.0.0"; sha256="195mwr4bf79ryisvi7rv3i70ajvdcdy0l2n5zij6bhxwzbkb63db"; depends=[AzureRMR jsonlite R6]; };
   B2Z = derive2 { name="B2Z"; version="1.4"; sha256="0w7394vs883vb32gs6yhrc1kh5406rs851yb2gs8hqzxad1alvpn"; depends=[coda mvtnorm numDeriv]; };
   BACA = derive2 { name="BACA"; version="1.3"; sha256="1vbip7wbzix1s2izbm4058wmwar7w5rv3q8bmj9pm7hcapfi19k0"; depends=[ggplot2 RDAVIDWebService rJava]; };
@@ -218,7 +220,7 @@ in with self; {
   BAMBI = derive2 { name="BAMBI"; version="2.1.0"; sha256="029yzjv6zj54g9g0g4c6aj89dilcasnjipsf2d95n1xkzpvssvyp"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve scales]; };
   BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; };
   BANEScarparkinglite = derive2 { name="BANEScarparkinglite"; version="0.1.2"; sha256="0yxsgk4p7i8arjkchsiml6lx97inpmaihb61787vcl8kxyx7v6wr"; depends=[dplyr httr lubridate RCurl readr rvest XML xml2 zoo]; };
-  BANOVA = derive2 { name="BANOVA"; version="1.1.2"; sha256="04f11394z3zni1fxk60zd61kgy1603nfb81wkkqg8jh4997nhbmi"; depends=[coda rjags rstan runjags]; };
+  BANOVA = derive2 { name="BANOVA"; version="1.1.3"; sha256="11f5s1paskq5z3hwy6gs8irgignjfmjr9qz3kxnir1ahxvrxs7ma"; depends=[coda rjags rstan runjags]; };
   BART = derive2 { name="BART"; version="2.5"; sha256="0ljlzk114r0r57mc4jy2ivx3fk953v1c70gmcq63z5j2z9dd7cak"; depends=[nlme nnet Rcpp survival]; };
   BAS = derive2 { name="BAS"; version="1.5.3"; sha256="0xf8wd42mlk6dkkiwzf9lyb5fvqmpjsqyzay146d6p2y1zk65lc0"; depends=[]; };
   BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; };
@@ -267,7 +269,7 @@ in with self; {
   BH = derive2 { name="BH"; version="1.69.0-1"; sha256="18mckfwxxv8m8rzaz03mg2h6vhaj7y131h6yasfg0s73nxj47zd0"; depends=[]; };
   BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; };
   BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="1.3"; sha256="1cha6bw0zvv30y2hjl1a4d04g1r80dfa7r7zi63q5jjnnbklbswg"; depends=[oro_nifti wavethresh]; };
-  BHSBVAR = derive2 { name="BHSBVAR"; version="1.0.3"; sha256="1k9bqxsxx4rxi0kr7zskdlryvcq45fxifrnk7sd9lsx63s6qlrjm"; depends=[Rcpp RcppArmadillo]; };
+  BHSBVAR = derive2 { name="BHSBVAR"; version="1.0.4"; sha256="19sqcfg6w6cnk35bxdc0wzizh0slhl684yhjh7zyg1k92dvprfr6"; depends=[Rcpp RcppArmadillo]; };
   BHTSpack = derive2 { name="BHTSpack"; version="0.5"; sha256="1sz99sgxhiajxca5bx2ns9g9qs9ymsvh8i5882nlp7c78qxmqc4g"; depends=[R2HTML xtable]; };
   BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; };
   BIEN = derive2 { name="BIEN"; version="1.2.3"; sha256="0p23kahba55gkk6wx10ii6vrni3b7ia2a4jb64ww4kwp86bknx3d"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; };
@@ -293,18 +295,17 @@ in with self; {
   BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; };
   BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; };
   BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; };
-  BMSC = derive2 { name="BMSC"; version="0.2.0"; sha256="049g14829rfgwx52isdl4028d7gh1wb7dbmnj9zz0skwb7qrpz9g"; depends=[BH dplyr ggplot2 loo R_utils Rcpp RcppEigen rstan rstantools StanHeaders]; };
   BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; };
   BMTME = derive2 { name="BMTME"; version="1.0.6"; sha256="1x15h3l459g4k7i97yry2wlb4arw35mkv7jiad6d23jifz5l6485"; depends=[BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress Rcpp RcppArmadillo snow tidyr]; };
-  BMhyb = derive2 { name="BMhyb"; version="1.5.2"; sha256="0sf12xibr22i3pqdb7zay1mmgfnvqxdlimsbd8y5pi4ybiqz8bl8"; depends=[ape corpcor DEoptim geiger lhs Matrix mvtnorm numDeriv phylobase phytools TreeSim viridis]; };
+  BMhyb = derive2 { name="BMhyb"; version="2.1.5"; sha256="0yyvrn5akj132zkxlg5kicj12d7agzmi84jird4aj7hvi88l5wwv"; depends=[ape corpcor cowplot DEoptim geiger ggplot2 igraph lhs MASS Matrix metR mvtnorm numDeriv phytools plyr TreeSim viridis]; };
   BMhyd = derive2 { name="BMhyd"; version="1.2-8"; sha256="14pv5f621zq5x9i408zjm8k80hcsabkjpdf86gk3ylgw5yqcivrx"; depends=[ape corpcor geiger mvtnorm numDeriv phylobase phytools TreeSim]; };
   BMisc = derive2 { name="BMisc"; version="1.3.1"; sha256="0wh17bf1ii6zan09n59cf9257nb60nh08ig01id9k0bvm9f14ay6"; depends=[formula_tools plm]; };
   BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; };
   BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; };
   BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.2.4"; sha256="06s0cs3anbby93n7pjcin9195agfzfq9im6f9k7ih3cbg8mzfaqy"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; };
   BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; };
-  BNPdensity = derive2 { name="BNPdensity"; version="2017.03"; sha256="0anpi75wwx91dbm937ydgcpd8wchm0nyciy4xdhppsvzq9v3d2hp"; depends=[]; };
-  BNPmix = derive2 { name="BNPmix"; version="0.1.2"; sha256="10zm1ds07gb9iih8rh72djzimw3ja3qja7fsjxga25qrw0pdf7ic"; depends=[ggplot2 Rcpp RcppArmadillo]; };
+  BNPdensity = derive2 { name="BNPdensity"; version="2019.7.9"; sha256="1r6cisb4ygk8jxdlc2kma7f61rviad5782di8r3ksp5nal6gb31f"; depends=[coda dplyr ggplot2 gridExtra survival tidyr viridis]; };
+  BNPmix = derive2 { name="BNPmix"; version="0.2.2"; sha256="0q4kn4ryn9m9vcxjsnbp2rcd9cn3na09nci79g30lscgwfci7w0a"; depends=[ggplot2 Rcpp RcppArmadillo]; };
   BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; };
   BNSP = derive2 { name="BNSP"; version="2.1.0"; sha256="01nfzyzd1s55rhc1mghlcqgq6cnp8g44acyfb89vd0w9mdwgj8r0"; depends=[coda corrplot cubature Formula ggplot2 gridExtra mgcv plot3D plyr threejs]; };
   BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; };
@@ -317,7 +318,7 @@ in with self; {
   BSDA = derive2 { name="BSDA"; version="1.2.0"; sha256="0gs33yyca45jd4f5k5f7qid4ayw2rnl2wl7a6m7vf39dfx7ympm2"; depends=[e1071 lattice]; };
   BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; };
   BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; };
-  BSL = derive2 { name="BSL"; version="2.0.0"; sha256="14wd7g2b2l3777c07f392mb4dy9azy645zwlfc6lrh8lbcrgqdlc"; depends=[coda copula cvTools foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo]; };
+  BSL = derive2 { name="BSL"; version="3.0.0"; sha256="1cmydj59slj88awc2i7jg84hfaa9j3qp4d1042dgamc7xqvfh397"; depends=[coda copula foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo]; };
   BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; };
   BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; };
   BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; };
@@ -329,7 +330,7 @@ in with self; {
   BTYDplus = derive2 { name="BTYDplus"; version="1.0.1"; sha256="0x8as4zskpbsvhh8gnvzgp833dkv01cs5fqfva9qri296343kppv"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; };
   BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; };
   BUCSS = derive2 { name="BUCSS"; version="1.1.0"; sha256="1agx6yd29zq6gvwgnd0qahjnk5z7gdbijbg7rk85d5x6pihwmh9q"; depends=[]; };
-  BVAR = derive2 { name="BVAR"; version="0.1.3"; sha256="0dhg5l1r6ayh14c4h26v1p91vy8qi1zkwjj6grz0wc3w2whcs8gi"; depends=[MASS]; };
+  BVAR = derive2 { name="BVAR"; version="0.1.5"; sha256="0vq1a4a5l444asbbr5f9ha6s3py9n24dria1a7yk3wfh302fj15s"; depends=[MASS]; };
   BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; };
   BVSNLP = derive2 { name="BVSNLP"; version="1.1.8"; sha256="0qlmvi189ky6h0a3jyvyil488asx3v6x52mvca7s93dvarxr6rw1"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; };
   BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; };
@@ -343,6 +344,7 @@ in with self; {
   BalanceCheck = derive2 { name="BalanceCheck"; version="0.2"; sha256="0aal641vfbjk3w6ipwbqqmm9nnxs962hjmpph9wnqaqk5r6s7brs"; depends=[ade4 mvtnorm]; };
   BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.5"; sha256="01ayvjfs83dbnk0m9xb7y9rnxxpfpb6w4qjdffd6hdhcn2s5f73d"; depends=[Rcpp SamplingBigData]; };
   Ball = derive2 { name="Ball"; version="1.3.8"; sha256="0zzi4xmarha30n5c2k452vr4dli1nc1rpx79pwfaj5h0rn1q01yy"; depends=[gam mvtnorm survival]; };
+  BallMapper = derive2 { name="BallMapper"; version="0.1.0"; sha256="1v0n4nyxhz3i7jkyrg3zgznz4z0rim68pv60dvn8197q81z0bk7g"; depends=[fields igraph networkD3 scales testthat]; };
   BarBorGradient = derive2 { name="BarBorGradient"; version="1.0.5"; sha256="0g2g7hrm23as1xbj79g48r8sj3gsj66fmi895jqlqfbqrl2fl7a5"; depends=[]; };
   BarcodingR = derive2 { name="BarcodingR"; version="1.0-2"; sha256="1mn5rdax8v1s2z3apk9z0kzy4hw19m8ql6j91l6wd29g2n2bjqxx"; depends=[ape class nnet sp]; };
   Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; };
@@ -358,7 +360,7 @@ in with self; {
   BayesBD = derive2 { name="BayesBD"; version="1.2"; sha256="10ik2lndqgmy6pvdm6cx4fsxgjb2fgi6hlz5ic35ab7fkpi90ka5"; depends=[jpeg mritc png Rcpp RcppArmadillo shiny]; };
   BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; };
   BayesCR = derive2 { name="BayesCR"; version="2.1"; sha256="1qav7l64iqqdvr1v6c7hlzvbx7zbvsa55pyisvkq5rsayy1rdsl1"; depends=[mnormt mvtnorm rootSolve truncdist]; };
-  BayesCTDesign = derive2 { name="BayesCTDesign"; version="0.5.0"; sha256="0q37q2mwvg9616chr2xzgd4mrpv9rqsqq9p0lc02gi35ay7hafcp"; depends=[eha ggplot2 reshape2 survival]; };
+  BayesCTDesign = derive2 { name="BayesCTDesign"; version="0.6.0"; sha256="1ym2v5ynmb28miwivyjx604vfsfi5ksmaha0far0ddq2cl06if2q"; depends=[eha ggplot2 reshape2 survival]; };
   BayesCombo = derive2 { name="BayesCombo"; version="1.0"; sha256="01rzjja0xzvqyjivl8a9da13v13ylm4dwv4f27cmgz2znakfg5y8"; depends=[]; };
   BayesComm = derive2 { name="BayesComm"; version="0.1-2"; sha256="1rrbvwcfm93cw0m33g0zn6nyshfjc97kb3fby9cga0zaixc0a8rk"; depends=[abind coda mvtnorm Rcpp RcppArmadillo]; };
   BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; };
@@ -381,7 +383,6 @@ in with self; {
   BayesS5 = derive2 { name="BayesS5"; version="1.31"; sha256="1azxn3r0s52zy6y5qsa6yx331795mkk7fb28fcinv2zx9iyvk33w"; depends=[abind Matrix snowfall]; };
   BayesSAE = derive2 { name="BayesSAE"; version="1.0-2"; sha256="1xbx9hr254agpcqs1fl7qi7h19fd2bbmjszn44l566n2svgvxwf5"; depends=[coda Formula lattice]; };
   BayesSenMC = derive2 { name="BayesSenMC"; version="0.1.1"; sha256="0bvlhhivdaw386ir5zb47bxg5dbqlfjfxbs28gjdr0csskwvh107"; depends=[dplyr ggplot2 lme4 Rcpp rstan]; };
-  BayesSingleSub = derive2 { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda MCMCpack mvtnorm]; };
   BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; };
   BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="1.0-1"; sha256="05mlgyi4fglvjkpqyw3vcjpipqllx37svcb20c1mrsa46m6fm4s7"; depends=[ff mvnfast]; };
   BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; };
@@ -392,7 +393,7 @@ in with self; {
   BayesX = derive2 { name="BayesX"; version="0.3-0"; sha256="0vgi0yng53x0w18h4n0ygqmcky7jwmk99j4gcv2vwhcmz45s73j0"; depends=[coda colorspace maptools shapefiles sp]; };
   BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-1"; sha256="0l8c6xsyqj09m722hdanr1d9n6a1ps77ybm1jaqmp86bqmq1br03"; depends=[]; };
   BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; };
-  BayesianFROC = derive2 { name="BayesianFROC"; version="0.1.3"; sha256="1vwbspzwqx68y5yml9rm8ldagx391qg8m0wqf5k2qvy7n92vcl6l"; depends=[bridgesampling car crayon DiagrammeR ggplot2 knitr Rcpp readxl rstan xlsx]; };
+  BayesianFROC = derive2 { name="BayesianFROC"; version="0.1.5"; sha256="11dpha68vh68ifxk721p3jiklaaavzq06cs12ph95lakrlbv9mr8"; depends=[bridgesampling car crayon DiagrammeR ggplot2 knitr pracma Rcpp readxl rhandsontable rstan shiny shinydashboard xlsx]; };
   BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; };
   BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.5"; sha256="0vnnxzxz68dkfwr9wif8lam3a4khgbslbf49xkygqm8n1swysx2x"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinytest shinyWidgets testthat]; };
   BayesianPower = derive2 { name="BayesianPower"; version="0.1.6"; sha256="1n41blyqmjq2zdhbz8srsx32piyg26fwgzfphhka12ybk93b2d2h"; depends=[]; };
@@ -408,6 +409,7 @@ in with self; {
   Bergm = derive2 { name="Bergm"; version="5.0.0"; sha256="0l04hg5rwgi5vgb7h987f0j3shb0vz9w26zmk4hm7vfbwb9xxix6"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network]; };
   Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; };
   BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; };
+  BetaPASS = derive2 { name="BetaPASS"; version="1.0-1"; sha256="0c9a3bv9q9nzz3iw3jwqrkfqk4zd6ybaq4jlijja6rl2gqrprsi2"; depends=[betareg ggplot2 lmtest Rcpp reshape]; };
   BeviMed = derive2 { name="BeviMed"; version="5.3"; sha256="01q5pr776ki973bcld20cqpsz9f10bb30vj95da9gbz5af6bvb14"; depends=[Rcpp]; };
   BeyondBenford = derive2 { name="BeyondBenford"; version="1.1"; sha256="1mqrzd6hpfsqxwm2sgc2lmgx7czvaj7qvhs05pj6p63n0fiimq9c"; depends=[]; };
   Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; };
@@ -430,13 +432,13 @@ in with self; {
   BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; };
   Binarize = derive2 { name="Binarize"; version="1.3"; sha256="0xmgxlfyvgkv7xpngy9am6ihzwbjbfgp7psfnyhb1v0kj9iy7ids"; depends=[diptest]; };
   BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; };
-  BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.2"; sha256="0la8mi2wadcxwrq882n4zxvihyqkp8m383c28gl9gm4fs8cqwlxi"; depends=[expm Formula lmtest numDeriv]; };
+  BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.3"; sha256="0fydh3pp7y0glk2rhihcslzx10hgn5la922jbnqzg2nplvzv7ybj"; depends=[expm Formula lmtest numDeriv]; };
   BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; };
   BioCircos = derive2 { name="BioCircos"; version="0.3.4"; sha256="1gl57r47p5z1wzs94xzc26j2r8z5hpqr4163b01x6jwzvbrlfwhz"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; };
   BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; };
   BioInstaller = derive2 { name="BioInstaller"; version="0.3.7"; sha256="0xbxv2ln39z70javxbx5rf77yf9zyjif3ppnr3id7cmy24hhqcab"; depends=[configr devtools futile_logger git2r jsonlite liteq R_utils RCurl rvest shiny stringi stringr]; };
   BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; };
-  BioMedR = derive2 { name="BioMedR"; version="1.1.2"; sha256="0b72fqp2kkvszv4rrz42xidivy6lk4w92rcq1zjqd9vlkvmgx7h8"; depends=[Biostrings ChemmineR fmcsR GOSemSim org_Hs_eg_db pls randomForest rcdk RCurl rjson]; };
+  BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; };
   BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; };
   BioStatR = derive2 { name="BioStatR"; version="3.0.0"; sha256="1fv37xckhpn0b744r71q7h57pr5j2y0v8hcc97cgzdsqd8p4axmk"; depends=[ggplot2]; };
   BiocManager = derive2 { name="BiocManager"; version="1.30.4"; sha256="0kxs76pixk1d2lpvkyrq6nnvv1rqf55ph5f7igkadyyqirf3y2ah"; depends=[]; };
@@ -480,7 +482,6 @@ in with self; {
   BootstrapQTL = derive2 { name="BootstrapQTL"; version="1.0.2"; sha256="1qf93wmrh6znm81jr3gyn1sl8x4i6pdx811r70fg8k026fbfjn3a"; depends=[data_table foreach MatrixEQTL]; };
   Boruta = derive2 { name="Boruta"; version="6.0.0"; sha256="1pp8zal1vhxlzdhl20phn39m3ffhw5glyqbcgwa0w14zw2mpm6hw"; depends=[ranger]; };
   BosonSampling = derive2 { name="BosonSampling"; version="0.1.1"; sha256="0wxn12h903a0mlrkrr3w4qd9ld2a4bifs95i98cnl2dsb76rwf12"; depends=[Rcpp RcppArmadillo]; };
-  BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="5.9.2"; sha256="0cyhqglz0mhfi8yk3a1qdry5ljd8rjzayqj1hyw44w9b8xsm6659"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; };
   BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-0"; sha256="13lhs6rynyj9cw13panqbn2jzkhq5fixhfd0ldr128gvw5d43hxg"; depends=[brglm gtools lme4 qvcalc]; };
   BradleyTerryScalable = derive2 { name="BradleyTerryScalable"; version="0.1.0"; sha256="0g12fkfs2sykyd6fzf924zv8gj2js452c4pf0pz2p6156chwrk8c"; depends=[dplyr igraph Matrix purrr Rcpp RcppArmadillo]; };
   BrailleR = derive2 { name="BrailleR"; version="0.29.1"; sha256="0n6njampfav84yd68vi4nw8h3dm285m3wfqi048ghiw740sa4rjk"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest reticulate rmarkdown roloc rolocISCCNBS whisker XML xtable]; };
@@ -499,10 +500,10 @@ in with self; {
   BuyseTest = derive2 { name="BuyseTest"; version="1.7"; sha256="0sjbwacpkw54wwzxd6866dzd03scl5g8ixcxs5ry26b2w0dncy60"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; };
   C443 = derive2 { name="C443"; version="1.0.0"; sha256="0d04769m9kkjqpj1cgfhqrri893nwi6qn7fz63z5pkym5cig5yyi"; depends=[cluster ggplot2 gridExtra igraph MASS partykit qgraph RColorBrewer reshape2 rpart]; };
   C50 = derive2 { name="C50"; version="0.1.2"; sha256="1fpspmsm62h077dkdhii23bs3sxlblabfqj4waz794ihw1b9hicg"; depends=[Cubist partykit]; };
-  CA3variants = derive2 { name="CA3variants"; version="1.0"; sha256="006r3a8jhkbgdfpycbdv3q1pfx9pkf102cgi285awgdhs6fhh88s"; depends=[ggplot2 ggrepel gridExtra]; };
+  CA3variants = derive2 { name="CA3variants"; version="2.0"; sha256="1wnc9qfcligpsi5ycmzw0igm14h6lvf4vd82aygnas6q41vnypwz"; depends=[ggplot2 ggrepel gridExtra multichull]; };
   CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; };
   CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; };
-  CAISEr = derive2 { name="CAISEr"; version="0.3.3"; sha256="1jbmc2ajmvqs7i1qxx1drx6nqqwl29hxk02qmyf8iamg7ip4adqi"; depends=[assertthat pbmcapply]; };
+  CAISEr = derive2 { name="CAISEr"; version="1.0.14"; sha256="0jfpn4ih5dc55jjiivbdscpm6jw250js8p8gvcnsdf3pgrzp8cxr"; depends=[assertthat ggplot2 gridExtra lattice pbmcapply]; };
   CALF = derive2 { name="CALF"; version="0.2.0"; sha256="12w1vr0rk6m4lv6zvqrf45k81d301ln1253wyy9xi6mv1hkabg0v"; depends=[ggplot2]; };
   CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-1"; sha256="1xsnqyj0qdi081rdnpas9ciy9zbhdcjx3lphl6drk0bbmik3znkv"; depends=[mice mvtnorm randomForest]; };
   CAM = derive2 { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; };
@@ -521,6 +522,7 @@ in with self; {
   CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; };
   CATTexact = derive2 { name="CATTexact"; version="0.1.0"; sha256="0mklkmay9ph4d0z2l1gcg0lj429xkyhmz7srdil5rgwqxx9dnqs8"; depends=[]; };
   CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; };
+  CAWaR = derive2 { name="CAWaR"; version="0.0.1"; sha256="1z8xmwnxwlk0nhi22nabwzggizzsp8jzwfln0h2hkk7h1p8xjlhk"; depends=[fieldRS ggplot2 lubridate raster rgdal rgeos rsMove RStoolbox sp spatialEco]; };
   CAinterprTools = derive2 { name="CAinterprTools"; version="1.0.0"; sha256="1ia4qfvj0nzxi6pwqnha2vpfcx3qwaw4vrjqiza11sai274j0pjy"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; };
   CAvariants = derive2 { name="CAvariants"; version="4.0"; sha256="16k25rhwzih1spbp0m80lv2vfrbm8l5ajkgp2i27gvnhhln227qm"; depends=[ggplot2 ggrepel gridExtra rgl]; };
   CB2 = derive2 { name="CB2"; version="1.2.1"; sha256="089cf0pcy5xyzr6pl9ljqc52cy2bh2xfxhfh7iika2wv932wwq98"; depends=[dplyr ggplot2 glue magrittr metap pheatmap Rcpp RcppArmadillo stringr tibble tidyr]; };
@@ -554,7 +556,7 @@ in with self; {
   CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; };
   CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; };
   CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; };
-  CHNOSZ = derive2 { name="CHNOSZ"; version="1.3.2"; sha256="01ixqd9fwxr74ifk5c7s9q5f92pdgwqy4wyi2ipk16kzj4q5w8xr"; depends=[]; };
+  CHNOSZ = derive2 { name="CHNOSZ"; version="1.3.3"; sha256="02rlznp4vkdwkf23jy84dciv2mv1421ghqxllw4i2z2jxgxvb921"; depends=[]; };
   CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; };
   CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.3"; sha256="0yhay4fp5lyf0sdcf807yvys17qz9cr5f5ikim25mq336p7fp03x"; depends=[Matrix mvtnorm numDeriv stringr]; };
   CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; };
@@ -581,7 +583,7 @@ in with self; {
   CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; };
   CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; };
   CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; };
-  CNVScope = derive2 { name="CNVScope"; version="1.9.7"; sha256="1xj82nwkv27wfwrks9rckdgmhlqfl4n0zmcqqa3f9ryx79jm7zbl"; depends=[BiocManager biomaRt blockseg BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap data_table doParallel dplyr DT foreach GenomicFeatures GenomicInteractions GenomicRanges ggplot2 heatmaply HiCseg htmltools htmlwidgets igraph InteractionSet IRanges jointseg logging magrittr Matrix matrixStats numbers OpenImageR plotly plyr RCurl readr reshape2 rslurm rtracklayer S4Vectors shiny shinycssloaders shinyjs shinythemes spatialfil tidyr visNetwork]; };
+  CNVScope = derive2 { name="CNVScope"; version="2.7.0"; sha256="1m5g6qfqlqnysqcmia54hasb1bdp70a1jzlqb8dz8830lzw797fi"; depends=[BiocManager biomaRt blockseg BSgenome_Hsapiens_UCSC_hg19 circlize data_table doParallel dplyr foreach GenomicFeatures GenomicInteractions GenomicRanges ggplot2 heatmaply HiCseg htmltools htmlwidgets igraph InteractionSet IRanges jointseg logging magrittr Matrix matrixStats numbers OpenImageR plotly plyr RCurl reshape2 rslurm rtracklayer S4Vectors shiny shinycssloaders shinyjs shinythemes spatialfil stringr tibble tidyr visNetwork]; };
   CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; };
   CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; };
   COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; };
@@ -662,8 +664,9 @@ in with self; {
   CausalImpact = derive2 { name="CausalImpact"; version="1.2.3"; sha256="16qwf1kcs7x6qw18zpabs4zsv3m7xwxixf89krnipydiwlpxjjn6"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; };
   CausalKinetiX = derive2 { name="CausalKinetiX"; version="0.2.1"; sha256="0haxw4vvbw48hlvsl1d1y3xm48qm5vl0d3k5lj89ajwc618nk5jg"; depends=[cvTools deSolve fda glmnet pspline quadprog randomForest sundialr]; };
   Causata = derive2 { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[boot data_table foreach ggplot2 glmnet R_utils RCurl rjson RMySQL stringr XML yaml]; };
+  CautiousLearning = derive2 { name="CautiousLearning"; version="1.0.1"; sha256="1m5x93l4bscrpcxk0pva6d6n2qnzhzxh0a6a81p97l8lqgs1qw2q"; depends=[BH Rcpp sitmo spc]; };
   CePa = derive2 { name="CePa"; version="0.6"; sha256="1qpxx9x656g678wp190q29vxkb54sfkalg0csg0ndlcvi03dvl3d"; depends=[graph igraph Rgraphviz]; };
-  CeRNASeek = derive2 { name="CeRNASeek"; version="1.0"; sha256="016z4wsv6mz622rrvnaxbd6ri21pinahasmdswf62vp9l8jahq25"; depends=[gtools igraph]; };
+  CeRNASeek = derive2 { name="CeRNASeek"; version="2.1"; sha256="007wzq18p8dp7v4dplxsnq3i1qvd740s59nv9ygcr28d6gvsx1fy"; depends=[gtools igraph survival]; };
   CensMixReg = derive2 { name="CensMixReg"; version="3.1"; sha256="1r7w84bjdxnkhiw7gh499scc6m3ba9b2a8cwayn6sg5a524yn9gs"; depends=[ClusterR mixsmsn mnormt mvtnorm trimcluster]; };
   CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; };
   CensSpatial = derive2 { name="CensSpatial"; version="1.3"; sha256="0gd1c5qlk71avv0s3jqwb00h9cm6djg9qwzc1znc3kh61wx9kvfi"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster tmvtnorm]; };
@@ -676,13 +679,13 @@ in with self; {
   ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; };
   ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.16"; sha256="02kxybv9299j36xl4wk6d50crdnz0f6qbyxjiy6xf0s7hnlcr44c"; depends=[Rcpp RcppArmadillo]; };
   ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.1"; sha256="0qy92ij1riynz7dhri3z85pafww5w9j1gx1bcgr8phlr32a7had7"; depends=[ChannelAttribution data_table ggplot2 shiny]; };
-  Chaos01 = derive2 { name="Chaos01"; version="1.1.1"; sha256="0ibxibmlyc6wkhqj2achwkwdkniin60y8xh8b80nq6ggmm7w9crw"; depends=[]; };
+  Chaos01 = derive2 { name="Chaos01"; version="1.2.0"; sha256="10780nxdakk4xnbzdnrcm3z66ipx5pf676n9s1arb4g624splc61"; depends=[]; };
   ChaosGame = derive2 { name="ChaosGame"; version="0.4"; sha256="10bq8i6b6zkg8nzq5np998xabyvijizxfbvw1m2nvfh74vxspj4p"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; };
   ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; };
   CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; };
-  ChemoSpec = derive2 { name="ChemoSpec"; version="5.1.9"; sha256="0xhwb62s5cs1rfnk9wq6zkgfgs598l7m2cfsf84r690v64qiqycb"; depends=[ChemoSpecUtils plyr]; };
+  ChemoSpec = derive2 { name="ChemoSpec"; version="5.1.48"; sha256="0jadmz03y6zybmhm2zg8qbhrhgawxbf4c3fs021qyhvlcrs162q7"; depends=[ChemoSpecUtils plyr]; };
   ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.3.166"; sha256="0b0pis55kz4r55qxwdlic87crnhkifvcylngkaxsfv1vqqz2wwlc"; depends=[ChemoSpecUtils]; };
-  ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="0.3.20"; sha256="1xrs7rjrb5q33njlz7988sawz0dy4ara9y44lf8v528j0m0hqpwc"; depends=[plyr]; };
+  ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="0.3.39"; sha256="1vd7miin5f236n5w9q7iy64fncycnh8zs0n04mir8ks76lzbga7w"; depends=[plyr]; };
   ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.13"; sha256="166va1g3m1wv21qkmw4wpz0bsrclh3jih8smxphdc13l9pqgclpq"; depends=[devtools kohonen MASS pls]; };
   ChillModels = derive2 { name="ChillModels"; version="1.0.0"; sha256="1829ybafx53kjwr6dbgixq3ayyvzbd9cdp4qw3l3kld6936kjilm"; depends=[]; };
   ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; };
@@ -708,20 +711,23 @@ in with self; {
   CliftLRD = derive2 { name="CliftLRD"; version="0.1-1"; sha256="0qsdv568klxg6chgw329jbfjmf6w61hly2vxp90yzdfkca03z2s4"; depends=[CNLTreg liftLRD]; };
   ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; };
   ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; };
-  ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.0.3"; sha256="15s2fzrjsav5qa5hbjxixz6398swmdr3isyr5a6f0hjc2bb12d5z"; depends=[climdex_pcic multiApply PCICt plyr]; };
+  ClimInd = derive2 { name="ClimInd"; version="0.1-2"; sha256="0brimmkr8ccdbpmcmgbd8ydx4cy0yblfrzcgx151x83wskzq04sj"; depends=[chron SPEI weathermetrics]; };
+  ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.0.4"; sha256="1819kv0h7qh285nykncdqr808b9v5fviccr0fbv2im7zni497scq"; depends=[climdex_pcic multiApply PCICt plyr]; };
   ClinReport = derive2 { name="ClinReport"; version="0.9.1.12"; sha256="0c0ixr28p8gj3mx2pkrmjvs13g9h8fv1y6ririvrwkbmrdikq7g3"; depends=[dplyr emmeans flextable ggplot2 officer reshape2 xtable]; };
   ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; };
   CloneSeeker = derive2 { name="CloneSeeker"; version="1.0.7"; sha256="07rh577m7xp6v0adchp0mbfs0mkglpv7p27794rm958nvfsmffds"; depends=[combinat gtools quantmod]; };
   ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; };
   ClusVis = derive2 { name="ClusVis"; version="1.2.0"; sha256="06yckdl3gxjia1gjjqpc29lvy4f7qf47fncslng9ggjnks6il145"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; };
-  ClustBlock = derive2 { name="ClustBlock"; version="1.0.0"; sha256="1qfk2dyx2wnc81x6wc3c6lrbxbwiwyxxvgy89sslwy4c0i61gpp0"; depends=[FactoMineR]; };
+  ClussCluster = derive2 { name="ClussCluster"; version="0.1.0"; sha256="1436849m2mnm8j7lf653zv8lcvvg2ch8kkks4bvr39kx21wxy8ss"; depends=[ggplot2 reshape2 rlang scales VennDiagram]; };
+  ClustBlock = derive2 { name="ClustBlock"; version="2.0.0"; sha256="0g6z4l4ilpamdi8wfmlwz21kjiwlwnl702i38rzlyvysr1afsxv1"; depends=[FactoMineR]; };
   ClustGeo = derive2 { name="ClustGeo"; version="2.0"; sha256="1p5k2w1k7hnacbazzj2yhxh4z2jngnsl4v5a9b3c8z1dr4nhcwxc"; depends=[sp spdep]; };
+  ClustImpute = derive2 { name="ClustImpute";