rPackages: CRAN and BioC update

1 files changed, 710 insertions, 599 deletions

diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix
index 14ef59101616..dec48149e935 100644
--- a/pkgs/development/r-modules/cran-packages.nix
+++ b/pkgs/development/r-modules/cran-packages.nix
@@ -4,7 +4,7 @@
 # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix
 
 { self, derive }:
-let derive2 = derive { snapshot = "2021-12-08"; };
+let derive2 = derive { snapshot = "2022-01-05"; };
 in with self; {
   A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; };
   AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; };
@@ -98,7 +98,7 @@ in with self; {
   ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; };
   ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; };
   AROC = derive2 { name="AROC"; version="1.0-3"; sha256="07kzkb0mlx8nj8c0kz2b6in51biwawv7vvqqkg0h5zfj92k26hdb"; depends=[Hmisc MASS Matrix moments nor1mix np spatstat spatstat_geom]; };
-  ARPALData = derive2 { name="ARPALData"; version="1.2.1"; sha256="1b5xzzykafg5h7m75pq262112d2m2057ljqp6jcd7rvgfaxfhnpk"; depends=[aweek data_table doParallel dplyr eurostat ggplot2 lubridate magrittr purrr readr rlang RSocrata sf stringi stringr tibble tidyr tidyselect tidyverse tm]; };
+  ARPALData = derive2 { name="ARPALData"; version="1.2.2"; sha256="1mp5wrkl6d0yg8vrp7p2b6jg6d1gchkda1nyxhcpa7wj96khnh2w"; depends=[aweek data_table doParallel dplyr eurostat ggplot2 lubridate magrittr moments purrr readr rlang RSocrata sf stringi stringr tibble tidyr tidyselect tidyverse tm]; };
   ARPobservation = derive2 { name="ARPobservation"; version="1.2.1"; sha256="1gpq5wl3mwp4hi49h1g6nnizzpnfc19pv8chdyhv8y5sraq1k2ag"; depends=[]; };
   ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; };
   ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; };
@@ -113,7 +113,7 @@ in with self; {
   ASSISTant = derive2 { name="ASSISTant"; version="1.4.2"; sha256="1vh1glk83lg010v2fc289gr6xy0dzbrqcjfva2mmaymk6v78a1w5"; depends=[dplyr knitr magrittr mvtnorm R6]; };
   ASSOCShiny = derive2 { name="ASSOCShiny"; version="0.1.0"; sha256="1g1ba9d5ywd3gbwjb36xnms8l15dg1vwc6r0nsb5adhpb602xsw1"; depends=[arules arulesViz dplyr plotly rmarkdown shiny shinyMatrix]; };
   AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; };
-  ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.55"; sha256="0p5n3hgx3iipssn7c81xn4zb4s1sz4mbr7bhslymblj9c8hy7vwm"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; };
+  ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.56"; sha256="1gqqs0jf6wwiza0wncyymjigz5010c3i6rl8zlwvylgwpby1p9rj"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; };
   ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; };
   ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; };
   ATbounds = derive2 { name="ATbounds"; version="0.1.0"; sha256="007gc9yjxwlhkb0mibxaa394xdiilfm8z6jbbqdn6wl986p07pg3"; depends=[mgcv]; };
@@ -191,7 +191,7 @@ in with self; {
   AntMAN = derive2 { name="AntMAN"; version="1.1.0"; sha256="118jhjjfnp23kbkir66rdvlzsvms316zwr2r5msrjrb3nd8lz5va"; depends=[bayesplot GGally mcclust mvtnorm Rcpp RcppArmadillo Rdpack salso]; };
   AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; };
   AnthropMMD = derive2 { name="AnthropMMD"; version="3.1.0"; sha256="10ms5akc2r9dmcm8dd8bn7qn0bq71c270yhs61981n4mxsvgjmnr"; depends=[plotrix scatterplot3d shiny smacof]; };
-  Anthropometry = derive2 { name="Anthropometry"; version="1.16"; sha256="0iqlmp9vig4qdavs37kislqxwhk0c0pgsn1kwz3mm75nylxmpbp0"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; };
+  Anthropometry = derive2 { name="Anthropometry"; version="1.17"; sha256="0vxjlzxv16bygw8n57f25msq5bd1dydg41my92ximah0nzzvbg41"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; };
   AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.18"; sha256="000pxpkxwfaynmlr8xpbnkck2q61ym281ykxq88mrscqgyimp40k"; depends=[DescTools openxlsx]; };
   Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; };
   AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; };
@@ -238,7 +238,7 @@ in with self; {
   AzureKusto = derive2 { name="AzureKusto"; version="1.0.6"; sha256="02wj1nzbs9l6aapk94p89gahbffmk3gy80l57bd1l0afpw0y3jr8"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; };
   AzureQstor = derive2 { name="AzureQstor"; version="1.0.1"; sha256="1z7j8kakiarpw3q2rii7gl9zc2nsb49nzs1nxg1hgfyvcdhw2fcg"; depends=[AzureRMR AzureStor httr openssl]; };
   AzureRMR = derive2 { name="AzureRMR"; version="2.4.3"; sha256="076hgxx2d6jf24fhysxk3mnp22ns8i6cqp3mzd64rafl1clqy3l1"; depends=[AzureAuth AzureGraph httr jsonlite R6 uuid]; };
-  AzureStor = derive2 { name="AzureStor"; version="3.5.2"; sha256="0c1pkzq62nk2nybhp60nvy6vjwgzcxyraw6fcldwqylqg1y4104h"; depends=[AzureRMR httr mime openssl R6 vctrs xml2]; };
+  AzureStor = derive2 { name="AzureStor"; version="3.6.0"; sha256="0yghwrhapamwfa4rbqmkk0ng68sl3f4jr0h3zr2lb4bqa4mc9nam"; depends=[AzureRMR httr mime openssl R6 vctrs xml2]; };
   AzureTableStor = derive2 { name="AzureTableStor"; version="1.0.0"; sha256="0xrfpi9psn1h21g4mvcbqsjav56s8cha381vsjkp1swilrxhmk5l"; depends=[AzureRMR AzureStor httr jsonlite openssl uuid vctrs]; };
   AzureVM = derive2 { name="AzureVM"; version="2.2.2"; sha256="0766a4y17qgq3vgb398n6zn8sdjrv65gpvrnr9b9g89zdsdy9fc4"; depends=[AzureRMR jsonlite R6]; };
   AzureVMmetadata = derive2 { name="AzureVMmetadata"; version="1.0.1"; sha256="15ghijzva6qzq2riq8ci4bh6ssknnp15yyy1fql0k4878wkf7vs0"; depends=[httr openssl]; };
@@ -289,7 +289,7 @@ in with self; {
   BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; };
   BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; };
   BDgraph = derive2 { name="BDgraph"; version="2.64"; sha256="0pnzbw09c7amsvj8l4p1jnmss4rkbr1dsmagiygh8lj5fbrklgr4"; depends=[igraph]; };
-  BE = derive2 { name="BE"; version="0.1.4"; sha256="11x1qr8f047ns7awhq5j6h95svxccn0knhvvr49bamv6r0rl0ys3"; depends=[rtf]; };
+  BE = derive2 { name="BE"; version="0.1.5"; sha256="0z4cd6z5r0r0smk8q0zhl264zj48pfp8w3hgdap59zsqrn5c6z5l"; depends=[rtf]; };
   BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; };
   BED = derive2 { name="BED"; version="1.4.4"; sha256="1hbdjxh695607ppmk39xclh26k1bq9hrysyp8nc5axhhg1drpiff"; depends=[dplyr DT htmltools miniUI neo2R readr rstudioapi shiny stringr visNetwork]; };
   BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; };
@@ -301,14 +301,14 @@ in with self; {
   BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; };
   BFS = derive2 { name="BFS"; version="0.4.1"; sha256="1crlx3v6bsd5gi0f1hhlcykydbpqn9fryfw5k0ynlcivgif0ll9z"; depends=[janitor jsonlite lifecycle magrittr pxweb rvest tibble tidyRSS xml2]; };
   BFpack = derive2 { name="BFpack"; version="1.0.0"; sha256="1z5j6gd8zv39advb4xmpcbixbg8n516h0gpqkblb8dnb4mbh6d1s"; depends=[bain extraDistr lme4 MASS Matrix mvtnorm pracma]; };
-  BGData = derive2 { name="BGData"; version="2.3.0"; sha256="0j6f5dk16vj1q3h1byrbyc2fdmgq102lx4mx8vyypsqxcds99csq"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; };
+  BGData = derive2 { name="BGData"; version="2.4.0"; sha256="0kbalppj7i9rswk8la3jdhzw7zvm9qjbps13i2h9q1s0lyjlcvd4"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; };
   BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; };
   BGGM = derive2 { name="BGGM"; version="2.0.4"; sha256="0676viahmid0n89jhs93ci8l7rxpam7rn75mdbshgx7f1q3wqiih"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; };
   BGLR = derive2 { name="BGLR"; version="1.0.9"; sha256="16chvslsknhfjdnfy79y4bl5xayvrk8j01y0r3nddq02ypwrc2j4"; depends=[MASS truncnorm]; };
   BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; };
   BGVAR = derive2 { name="BGVAR"; version="2.4.3"; sha256="109nmcjwbcgzcbah2pb8k3db3rbcpd2xsswjw1q7nl75v3rwdlp6"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; };
   BGmisc = derive2 { name="BGmisc"; version="0.1"; sha256="15xgm3n3hn5zkrvyfcylyz5q3zah0155914a0rck0ipihb45sbbl"; depends=[Matrix]; };
-  BH = derive2 { name="BH"; version="1.75.0-0"; sha256="0nkgvl5qjs2a7jv0ncsrl4fqaw2pdaj7a1pncdv6kp874sci0k5f"; depends=[]; };
+  BH = derive2 { name="BH"; version="1.78.0-0"; sha256="1cwc1q8w9d6i81nclgi7lycsnpj0dcbxlv9rdb0f04r0d03rv7iv"; depends=[]; };
   BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; };
   BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; };
   BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="1.3"; sha256="1cha6bw0zvv30y2hjl1a4d04g1r80dfa7r7zi63q5jjnnbklbswg"; depends=[oro_nifti wavethresh]; };
@@ -323,7 +323,7 @@ in with self; {
   BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; };
   BINtools = derive2 { name="BINtools"; version="0.1.0"; sha256="061g1790m3gi88kj1avgxdnpdvj6n2mg5dh17c7vx4gx5g5x2q2d"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan StanHeaders stringi tibble]; };
   BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; };
-  BIOMASS = derive2 { name="BIOMASS"; version="2.1.6"; sha256="1iz9vszfg8lxa6yxrz3dj2ihpkcpchdbzdws5y568fczakcv8z5l"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; };
+  BIOMASS = derive2 { name="BIOMASS"; version="2.1.7"; sha256="015gfn7b0viymrb06q33gwz8ljpiwawrdscb2q2bk0j6vi1gnncx"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; };
   BIOdry = derive2 { name="BIOdry"; version="0.8"; sha256="1zga8g50wjnnz2h9b3ak9q67qnl1f14cq6hvdzf9f84pphsnpasa"; depends=[ecodist nlme]; };
   BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; };
   BLCOP = derive2 { name="BLCOP"; version="0.3.3"; sha256="08y9vmx3cknjvk6ngfwxlfnc03cqpj97i1ijrs1cw5sahjc0vmhc"; depends=[fBasics fMultivar fPortfolio knitr MASS quadprog rmarkdown RUnit timeSeries]; };
@@ -345,7 +345,7 @@ in with self; {
   BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; };
   BMTAR = derive2 { name="BMTAR"; version="0.1.1"; sha256="0c70vkgv2sdci33yrk2n297k105wnlxj1qchskdparkiipf47xsh"; depends=[Brobdingnag doParallel expm ggplot2 ks MASS MCMCpack mvtnorm]; };
   BMTME = derive2 { name="BMTME"; version="1.0.19"; sha256="07iw6aqcwn4a29b85cavfw6hp66csdzlaqwas40zr5ga3kp72j51"; depends=[BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress Rcpp RcppArmadillo snow tidyr]; };
-  BMisc = derive2 { name="BMisc"; version="1.4.2"; sha256="03bhq5gf4x959sam0mhk3sm9h6q6ylbwqp3399l00k7zhg6n7dw8"; depends=[tidyr]; };
+  BMisc = derive2 { name="BMisc"; version="1.4.3"; sha256="1v7869kppbavr6y57bsafw8qc92p6ap1gkgzk8vgq3qj7blirpw6"; depends=[Rcpp RcppArmadillo tidyr]; };
   BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; };
   BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.3"; sha256="1dnylvag24zqp93acdbn0ilbdzbn250pjjp6hjdd9d1zvla2ck85"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; };
   BNPTSclust = derive2 { name="BNPTSclust"; version="2.0"; sha256="1ymvklv6d9684xzwdkvaxdjd1q20xmsf6kkfibn2wphlaqs2rh2n"; depends=[MASS mvtnorm]; };
@@ -356,7 +356,7 @@ in with self; {
   BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; };
   BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; };
   BOIN = derive2 { name="BOIN"; version="2.7.2"; sha256="03h6s1nn87xgkk830wls06mgflg0arq084k74gfp1k4wccwkjr5y"; depends=[Iso]; };
-  BOJ = derive2 { name="BOJ"; version="0.2.3"; sha256="0wphdsd9v74jyfj3mjc2mm23lwfls3q4kxc3ii0rvvdlma2xm49f"; depends=[dplyr readr rvest tidyr tidyselect xml2]; };
+  BOJ = derive2 { name="BOJ"; version="0.3"; sha256="1x9lz01fjdk0aybs6zsbbq2xfjvh99qiimmnrkbcd6sj880vn3a3"; depends=[dplyr readr rvest tidyr tidyselect xml2]; };
   BOSO = derive2 { name="BOSO"; version="1.0.3"; sha256="0zax40x2d62vcn8zznmzmykk33mv4vbjfl88i3r1djbvalcdf5cf"; depends=[MASS Matrix]; };
   BOSSreg = derive2 { name="BOSSreg"; version="0.2.0"; sha256="0ln4nx0jlvz5kqk9qkcl8a2cyhsdcqqfs5112qcaabjiwjnvla7w"; depends=[glmnet Matrix Rcpp RcppArmadillo]; };
   BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; };
@@ -369,14 +369,14 @@ in with self; {
   BRISC = derive2 { name="BRISC"; version="1.0.2"; sha256="1qkb98wlqyhi378darx62f5ymsr290pqq82msqwcj6ks0xi9mj2s"; depends=[matrixStats pbapply RANN rdist]; };
   BRL = derive2 { name="BRL"; version="0.1.0"; sha256="13qi78v3057qn4hfby14sp26hy3ibl50f06x8gpak6gi76g8bhwi"; depends=[]; };
   BRugs = derive2 { name="BRugs"; version="0.9-1"; sha256="1m3dlw6201bzf6fcm4qscpsmgjkpidwiil3m4iwfn0b0iv3dclcv"; depends=[coda]; };
-  BSBT = derive2 { name="BSBT"; version="1.1.0"; sha256="1a45ivld1j4nmy6v3giwicia0mppdms0xah9qns8m55lz5bbsj0p"; depends=[expm igraph MASS]; };
+  BSBT = derive2 { name="BSBT"; version="1.2.0"; sha256="1whf34fbnsjargby8dq2784rj9mj80ldjgdd3nm897h05h17bs9f"; depends=[expm igraph MASS]; };
   BSDA = derive2 { name="BSDA"; version="1.2.1"; sha256="0vcf3h1rkgs0mr6rri2zjkb3c62dmndm281zh4ddz2vyw27wpwg2"; depends=[e1071 lattice]; };
   BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; };
   BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; };
   BSL = derive2 { name="BSL"; version="3.2.2"; sha256="0yn0ay7f9214d8f5ghrpn4bzwfxv5gk13ip10f1mpkhqv0cjbham"; depends=[coda copula DBI doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; };
   BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; };
   BSS = derive2 { name="BSS"; version="0.1.0"; sha256="1lxmrdmr6c0niqz61kc9ybzszprn66jyinfy4dr9r6i161gvs4qg"; depends=[hypergeo MASS phangorn]; };
-  BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; };
+  BSSasymp = derive2 { name="BSSasymp"; version="1.2-3"; sha256="1nqj8w8ilyhladjzhjp1rhi3ff7ik1m76pdhgs16ph7pzdw36w6i"; depends=[fICA JADE]; };
   BSSprep = derive2 { name="BSSprep"; version="0.1"; sha256="0dkhx8vx9kg902i6nzkzbighf2szq12l0p8iwinlpb2qdf526lk6"; depends=[Rcpp RcppArmadillo]; };
   BSW = derive2 { name="BSW"; version="0.1.1"; sha256="0l6sw8lyk9mxfdw4s72hz6a0b30gi2a2vlcndkgahjlym6i5bz83"; depends=[Matrix matrixStats quadprog]; };
   BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; };
@@ -426,7 +426,7 @@ in with self; {
   BayesDesign = derive2 { name="BayesDesign"; version="0.1.1"; sha256="1h69a18wp2z96a002x154d2vd1imzap3zm7yfssm5dh7igha18zc"; depends=[]; };
   BayesESS = derive2 { name="BayesESS"; version="0.1.19"; sha256="023r5pxqa2ll3vyfmchdlcg6ay0qixphz24078g1immqp43mlrxm"; depends=[dfcrm LaplacesDemon MASS MatrixModels MCMCpack Rcpp RcppArmadillo RcppEigen]; };
   BayesFM = derive2 { name="BayesFM"; version="0.1.5"; sha256="1x6paj5fr036mry6yr32vrxx2kfz89c8dz39ky1nc6jg1q7x5a8i"; depends=[checkmate coda ggplot2 gridExtra plyr]; };
-  BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.2"; sha256="1z083v7is21gm0a458jm5ph3xfdm7mh29a6sg2r1njq82f8x3s3g"; depends=[coda gtools hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; };
+  BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.3"; sha256="171hbr445v8mq4hqi1k8q3h8zqsccwjv0a2mj98h9b77667ziyfw"; depends=[coda gtools hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; };
   BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; };
   BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; };
   BayesGPfit = derive2 { name="BayesGPfit"; version="0.1.0"; sha256="1sz0bb102h5fj1yz0k89cvcy0pvsh6rfm06i6lfz3pdhdjszsx00"; depends=[lattice]; };
@@ -443,12 +443,12 @@ in with self; {
   BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.1"; sha256="11c83iafhl8yasyy8xwk9wladbj986xpmgc8d3yd9dxkic71flw8"; depends=[FNN Matrix nimble StatMatch]; };
   BayesNetBP = derive2 { name="BayesNetBP"; version="1.5.9"; sha256="05khqmsr7p9x6s4h7ffkh1sa2aqj42f00z6xkxwm0xlxa6ji6v4s"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; };
   BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.0"; sha256="19fgx66r0hxm4ybjj9pw0xy4a6bw1rgfl0kjz6xwdyh9y9m3c8c6"; depends=[coda fda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag tidyverse]; };
-  BayesPPD = derive2 { name="BayesPPD"; version="1.0.3"; sha256="1w5jyvwwc7vk0wx41waq2ab92wb367d25hab55r2cs44vgcw04rl"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; };
+  BayesPPD = derive2 { name="BayesPPD"; version="1.0.4"; sha256="1kyr9f1r6m3zb095x88hgbma51si5b2vzddi7zkzl02ildkqghgl"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; };
   BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; };
   BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; };
   BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; };
   BayesProject = derive2 { name="BayesProject"; version="1.0"; sha256="0b1xqw7f9kfbmr8m6fl9d2fpwr364s4a5vdw57l6i5rm6lszyfh5"; depends=[Rcpp RcppEigen Rdpack]; };
-  BayesRGMM = derive2 { name="BayesRGMM"; version="2.0"; sha256="13f4mppiaj5j86ng9wx6jr9djzd2pvswzs5zdw9bx2y525qbhxhg"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; };
+  BayesRGMM = derive2 { name="BayesRGMM"; version="2.1"; sha256="0amvn45wng2wprclpg2nfxnfgfnkzfailvjk3gw5p5dgqxs63n97"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; };
   BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; };
   BayesReversePLLH = derive2 { name="BayesReversePLLH"; version="1.4"; sha256="1wigp9692z0vf1vm3cpbl6wcgp3zyqzfbrkd344hi88421kj1yxj"; depends=[Rcpp RcppArmadillo]; };
   BayesS5 = derive2 { name="BayesS5"; version="1.41"; sha256="0vs6s50h4gpxda9lbxfgn76k9kp81l62a6bv22r7ixsjlnd4baql"; depends=[abind Matrix snowfall splines2]; };
@@ -474,7 +474,7 @@ in with self; {
   BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.1"; sha256="1b8ndwnwsj2wzbjp3rivdsx5nsfg2rgv6mnlyp7jxaksxvf4ray7"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; };
   BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.5"; sha256="0vnnxzxz68dkfwr9wif8lam3a4khgbslbf49xkygqm8n1swysx2x"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinytest shinyWidgets testthat]; };
   BayesianPower = derive2 { name="BayesianPower"; version="0.2.3"; sha256="00rn3wmqrhk2pssbq5j2prl8m6cgfarr49672pnksp2dcbi47p20"; depends=[]; };
-  BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.3.3"; sha256="1rhhdw27nh24rsgbmbmg40ja29gz3ih375lyddmk0dd3f3ph4ldx"; depends=[dplyr ggforce ggplot2 magrittr reshape2 tibble tidyr]; };
+  BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.4.0"; sha256="1lxrsqsm1p69liy6114hkdpn395f4ggxvq7sas2vrbfy7vhscs82"; depends=[dplyr ggforce ggplot2 magrittr reshape2 tibble tidyr]; };
   BayesianTools = derive2 { name="BayesianTools"; version="0.1.7"; sha256="0330bbnny35h4gsmwg31p3n3i511wrckzmp174ydm55pvsdkhjdg"; depends=[bridgesampling coda DHARMa ellipse emulator gap IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; };
   Bayesiangammareg = derive2 { name="Bayesiangammareg"; version="0.1.0"; sha256="0b0fqmig7vgmlrq2884q0apfd89nn5k4dj8rqjizkkbw4qpzmylb"; depends=[mvtnorm]; };
   Bayesrel = derive2 { name="Bayesrel"; version="0.7.1"; sha256="080wxv9ik1ph7h74xfsa57dsddsvlvag0iybgrdajkn0svc5qb9m"; depends=[coda LaplacesDemon lavaan MASS Rcpp RcppArmadillo Rdpack]; };
@@ -502,6 +502,7 @@ in with self; {
   BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; };
   BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; };
   BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.2"; sha256="1vnwksw0j4lc2knlcmm5748pf4d7r44sn34s1mrv9p50hlnkk85p"; depends=[lavaan mirt mnormt MplusAutomation tidyr]; };
+  BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.14"; sha256="05mmi12wn0xis4vwjn9zi3gcpxm9jmp7kpfazxsasbwgvrdd9k3q"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; };
   BigQuic = derive2 { name="BigQuic"; version="1.1-9.1"; sha256="0b1vi06zakxcw045h6dnx6sy1fxzsmh69zh0m34vwr0rd18rrj5j"; depends=[Matrix Rcpp scalreg]; };
   BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; };
   BigVAR = derive2 { name="BigVAR"; version="1.0.6"; sha256="03d5a61clkngq67mkf2pyjj3k633kxp7g37myfplbxi55bdfmdlz"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; };
@@ -592,7 +593,7 @@ in with self; {
   BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; };
   BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; };
   BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; };
-  BuyseTest = derive2 { name="BuyseTest"; version="2.3.5"; sha256="1zsjfry283ldzvjx5bdn728nb8fisijkgvam0zwxxp3awh3dr43r"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo]; };
+  BuyseTest = derive2 { name="BuyseTest"; version="2.3.9"; sha256="0qvwv1yg18f4q3k5iad25zl3ww8zqas1miamk456wlqb345rfakx"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo riskRegression]; };
   Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; };
   C443 = derive2 { name="C443"; version="3.2.2"; sha256="0fs8pcqwhb9wqwharghr05v6jvgsqln3mya2v0zzcmir6qql33v2"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; };
   C50 = derive2 { name="C50"; version="0.1.5"; sha256="1mqn7xzl9sbx61jhhkiq1gllwf8s6l1cgz7mck53461p6147phgh"; depends=[Cubist partykit]; };
@@ -600,11 +601,11 @@ in with self; {
   CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; };
   CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; };
   CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; };
-  CALANGO = derive2 { name="CALANGO"; version="1.0.5"; sha256="1a5573k5w3ldvgv8x384857ychn089fvir9yn0ryis26xmzkfvx5"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; };
+  CALANGO = derive2 { name="CALANGO"; version="1.0.8"; sha256="0i9n03km29bnhikk0a4dsh4pdchbynqmcvwzply7y2fgzs9bfwx4"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; };
   CALF = derive2 { name="CALF"; version="1.0.16"; sha256="1y3db8yxgman6jx8ghqcqfh201zj1fykinm9rhfbgb0ixk9dq1yc"; depends=[data_table ggplot2]; };
   CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-6"; sha256="0ghi6pkv9ki0iz4lkli3hkrsk6xiph2ha2pij6dg4wi7mcjdhsbi"; depends=[mice mvtnorm randomForest]; };
   CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; };
-  CAMML = derive2 { name="CAMML"; version="0.1.0"; sha256="0mb4zz1s7ryjqq2dyml82wn54xa0lf1qv6bqkvci0zkv67bmcjhd"; depends=[AnnotationDbi dplyr edgeR MASS Matrix org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; };
+  CAMML = derive2 { name="CAMML"; version="0.1.1"; sha256="06xszdr3v41qqd2l0s3kdbzwn03054imazndplbihx5a7032gxvj"; depends=[AnnotationDbi dplyr edgeR MASS Matrix org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; };
   CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; };
   CARBayes = derive2 { name="CARBayes"; version="5.2.5"; sha256="0lrir2qqpignndvf8xjpyiwh9fc9iw2b0bin5vlxh88krhbkyx9f"; depends=[CARBayesdata coda dplyr GGally leaflet MASS MCMCpack Rcpp rgdal sp spam spdep truncnorm]; };
   CARBayesST = derive2 { name="CARBayesST"; version="3.2.1"; sha256="0gbn11lmfax6frc70dyl667r4afn36zrjrxxky3rvmry4apqpwl3"; depends=[CARBayesdata coda dplyr GGally ggplot2 gridExtra gtools leaflet MASS matrixStats MCMCpack Rcpp rgdal sp spam spdep truncdist truncnorm]; };
@@ -681,6 +682,7 @@ in with self; {
   CKAT = derive2 { name="CKAT"; version="0.1.0"; sha256="03vxl91z2mhi1h0xgcwhw63mvj56156zgphm16ijdff63pqxaryr"; depends=[CompQuadForm]; };
   CKLRT = derive2 { name="CKLRT"; version="0.2.3"; sha256="1d8sg3ncns3fpjaghz1h1z9nfrl31v09xijrzzsias8xjrpi191b"; depends=[MASS mgcv nlme Rcpp RcppEigen]; };
   CKMRpop = derive2 { name="CKMRpop"; version="0.1.3"; sha256="0d4sai2h2cfzh4hbg8yh7wqb459j948j3s0m218d3gcippm22jpb"; depends=[dplyr ggforce ggplot2 ggraph igraph magrittr purrr Rcpp readr stringr tibble tidygraph tidyr vroom]; };
+  CLA = derive2 { name="CLA"; version="0.96-2"; sha256="0cfa7zm13bin8hx8ki20kaz8fvkwdaiyl0pjghhld8vr5d3289kq"; depends=[]; };
   CLME = derive2 { name="CLME"; version="2.0-12"; sha256="161maq22r8wbd6c2dc8b47mh6991vc4iqmjr8g6yqb5gcwca8zhg"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; };
   CLONETv2 = derive2 { name="CLONETv2"; version="2.2.1"; sha256="1axkkagydpxdrz7ypw3x7bavaxk34lzj9bsdn1nah9nfr3cdia6h"; depends=[arules dbscan ggplot2 ggrepel sets]; };
   CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; };
@@ -717,7 +719,7 @@ in with self; {
   COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; };
   COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; };
   COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; };
-  COVID19 = derive2 { name="COVID19"; version="3.0.0"; sha256="1nrkrhkiznp4aqravrgipx0vqpjl8zqc5b949fq893lnfzrlpgqq"; depends=[data_table R_utils]; };
+  COVID19 = derive2 { name="COVID19"; version="3.0.1"; sha256="190l1g3hfwsbjhxbx58zlw5fyi7cqkh9avzkvss15iafr5crbvkj"; depends=[data_table R_utils]; };
   COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.1.8"; sha256="014g50ixnm9rnw2pgsgw6qvfk7wn75hbss3n2ylr1i5ndnr72m49"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; };
   CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; };
   CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; };
@@ -740,7 +742,7 @@ in with self; {
   CSGo = derive2 { name="CSGo"; version="0.6.7"; sha256="19awbblkx0g58gvd43xs1dmcsn588k185njw3fri8xxbn26xp5jy"; depends=[dplyr extrafont furrr future fuzzyjoin ggplot2 httr jsonlite magrittr purrr stringr]; };
   CSIndicators = derive2 { name="CSIndicators"; version="0.0.1"; sha256="1d0mdbgg4y9773di8a86c8lss5f29c936pa7qv7vvznyc7mxkqzz"; depends=[ClimProjDiags multiApply s2dv]; };
   CSMES = derive2 { name="CSMES"; version="1.0.0"; sha256="1ddr2b39d7nwan6dqf5xx9h6gzfxxk50r1d9vbpb9hc8a7d15vnp"; depends=[caTools data_table mco ROCR rpart zoo]; };
-  CSTE = derive2 { name="CSTE"; version="1.0"; sha256="18nsl0rvr3fiy8q7himd04da9yk99ylsz6ss0028nwz5bxhacn3a"; depends=[fda Rcpp survival]; };
+  CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; };
   CSTools = derive2 { name="CSTools"; version="4.0.1"; sha256="1vq5zmp75rzvimih84f9nmyq3n74625y3pjg0ripfycszyd27720"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv s2dverification verification]; };
   CSUV = derive2 { name="CSUV"; version="0.1.1"; sha256="1gh8gxwnrg4j017c08xfhm57rwci24sqmxxx00k3d0mw6j0mbdvw"; depends=[caret doParallel DT futile_logger ggplot2 glmnet HDCI MASS ncvreg relaxo reshape2 shiny shinyjs]; };
   CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; };
@@ -771,7 +773,7 @@ in with self; {
   CVrisk = derive2 { name="CVrisk"; version="1.1.0"; sha256="0xnpnjncdal2akdnkb52s7r82p2di0rc48h6nswbclkl5xf3snd6"; depends=[]; };
   CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; };
   CaPO4Sim = derive2 { name="CaPO4Sim"; version="0.2.0"; sha256="0s4mqlas41ll656hj1imzqydgwgw002d469z01fjdcs4d6daljw6"; depends=[DT htmltools magrittr plotly purrr rintrojs shiny shinycssloaders shinydashboard shinydashboardPlus shinyjqui shinyjs shinyWidgets visNetwork]; };
-  Cairo = derive2 { name="Cairo"; version="1.5-12.2"; sha256="14hgz5wmnhlbqkd1g662n1agmjnlj3pq69gfng1vb0ivr02l2lnx"; depends=[]; };
+  Cairo = derive2 { name="Cairo"; version="1.5-14"; sha256="0ysc40smkjwk8fmp5dk0q3nbp9xkxzz9pd4z5zkp2mrvrvx52xq6"; depends=[]; };
   CalSim = derive2 { name="CalSim"; version="0.5.2"; sha256="1ij3xaizq1lpq5vg25i8pz4khm7ab81kzfayp6a914n0jgxvprj7"; depends=[ExactMultinom spatstat spatstat_geom]; };
   Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; };
   CalibratR = derive2 { name="CalibratR"; version="0.1.2"; sha256="1hnmhijckxd35h8mhpzqpglk1ykdih2c5kg17myc7cci5xjk9nfr"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; };
@@ -857,7 +859,7 @@ in with self; {
   ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; };
   ClusBoot = derive2 { name="ClusBoot"; version="1.0"; sha256="1wh9mv932zarl8w098lgv2jpanp6r8nzdkyayv8nxk7nddl0bn1k"; depends=[]; };
   ClusPred = derive2 { name="ClusPred"; version="1.1.0"; sha256="12pm5vkfxpaincv9ajid0p07l0mjc2kfqqfg0ls2pcxmmkh8wwb4"; depends=[ald ALDqr quantreg Rcpp RcppArmadillo VGAM]; };
-  ClusTorus = derive2 { name="ClusTorus"; version="0.1.3"; sha256="1dklyiamwdhakrc7k9vgypr6rx567g4664zmn2mxsg53rhb7hqfb"; depends=[BAMBI ggplot2 igraph purrr rlang]; };
+  ClusTorus = derive2 { name="ClusTorus"; version="0.2.2"; sha256="052jq96xr9qrc203ib11qsni50j0jzdpfwmbnd5rypfvff6w5kxc"; depends=[BAMBI cowplot ggplot2 igraph purrr rlang]; };
   ClusVis = derive2 { name="ClusVis"; version="1.2.0"; sha256="06yckdl3gxjia1gjjqpc29lvy4f7qf47fncslng9ggjnks6il145"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; };
   ClussCluster = derive2 { name="ClussCluster"; version="0.1.0"; sha256="1436849m2mnm8j7lf653zv8lcvvg2ch8kkks4bvr39kx21wxy8ss"; depends=[ggplot2 reshape2 rlang scales VennDiagram]; };
   ClustAssess = derive2 { name="ClustAssess"; version="0.1.1"; sha256="1was06w9glqg8dgawx40jkxngcr04bm58yjqyi9fy0qzvcf9m78x"; depends=[dplyr fastcluster ggplot2 igraph magrittr Matrix Rcpp rlang]; };
@@ -873,7 +875,7 @@ in with self; {
   ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; };
   ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; };
   ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; };
-  Clustering = derive2 { name="Clustering"; version="1.7.3"; sha256="18p4ln6crbakqd1yv5zbs1q96d2k85259jhw76mii5di50dw3z21"; depends=[advclust amap apcluster cluster ClusterR data_table doParallel dplyr foreach future ggplot2 gmp pracma pvclust shiny sqldf xtable]; };
+  Clustering = derive2 { name="Clustering"; version="1.7.5"; sha256="1j3warx8kjn2nv4bl15nhbkr8xz45akds79c5x1qh6b4bvhn45jk"; depends=[advclust amap apcluster cluster ClusterR data_table doParallel dplyr foreach future ggplot2 gmp pracma pvclust shiny sqldf toOrdinal xtable]; };
   CoClust = derive2 { name="CoClust"; version="0.3-2"; sha256="04xv807785xv9kdspsspx1302ardv8gda06kd590lgawjixai7dh"; depends=[copula gtools]; };
   CoDiNA = derive2 { name="CoDiNA"; version="1.1.2"; sha256="1zjj86z8ica9j0x2nfyq9y6nyp54w07dwskcsg7z6kqibrkfvaq9"; depends=[data_table igraph magrittr plyr reshape2 visNetwork]; };
   CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; };
@@ -883,7 +885,7 @@ in with self; {
   CoOL = derive2 { name="CoOL"; version="1.0.3"; sha256="0iigndir0saxaxw233bfb31if6v9fm95fxxw43bqamfmk6g7b8r4"; depends=[ClustGeo data_table ggplot2 mltools plyr pROC Rcpp RcppArmadillo wesanderson]; };
   CoRpower = derive2 { name="CoRpower"; version="1.0.4"; sha256="08chsbbl74rskinp68pwzpvnxx5lkfqf71j7ryp1cwy7199h3jyw"; depends=[osDesign survival]; };
   CoSMoS = derive2 { name="CoSMoS"; version="2.1.0"; sha256="149mybfxaqssawp8fqhjiv3xljzflc02y4pfvavz7rklfplidqkb"; depends=[animation cowplot data_table directlabels ggplot2 ggquiver mAr Matrix matrixcalc MBA mvtnorm nloptr plot3D pracma]; };
-  CoTiMA = derive2 { name="CoTiMA"; version="0.4.4"; sha256="19vbc20ryzaicy8r15y4859cyllp8lr5azndkji8hz4zi5rvyr4m"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; };
+  CoTiMA = derive2 { name="CoTiMA"; version="0.5.2"; sha256="1q0pd6vrlgsnrrdv4xc6rv26jabnvj3fyzav6qyb0k7df9pdshn3"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; };
   CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; };
   CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; };
   CohortPlat = derive2 { name="CohortPlat"; version="1.0.3"; sha256="0na4idcckfqwwynx3kbfyqimzl46pna24aa9xlyjwbczf441gafm"; depends=[doParallel dplyr epitools forcats foreach ggplot2 openxlsx plotly purrr tidyr zoo]; };
@@ -901,7 +903,7 @@ in with self; {
   CommEcol = derive2 { name="CommEcol"; version="1.7.1"; sha256="1s6x4mhcx64qdzmp83x3mzmwyj1biawmdj2y752xpm8gpxfjnbc0"; depends=[adespatial ape betapart gmp picante vegan]; };
   CommT = derive2 { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; };
   CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-6"; sha256="0l1zqygklv1s3xr6pjjrji3wmyqg7258qvgwf9c2qjim8p8y8lsr"; depends=[]; };
-  CommonMean_Copula = derive2 { name="CommonMean.Copula"; version="1.0.1"; sha256="0d0l4kisglpws5ywdihxhj1zsd0k1g1ns3nrlw07w22y7k98v86b"; depends=[mvtnorm pracma]; };
+  CommonMean_Copula = derive2 { name="CommonMean.Copula"; version="1.0.4"; sha256="0c4la7sn3aynmj9qcz5d9gn9k3y5b38bjff0mfa5qccdb8rdkdhp"; depends=[mvtnorm pracma]; };
   CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; };
   Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; };
   CompAREdesign = derive2 { name="CompAREdesign"; version="1.9"; sha256="0jwq56y6h1jfrh0qm4z52wpia157g1yx003aa08mdjdk0xbdc8n5"; depends=[copula ggplot2 numDeriv rootSolve]; };
@@ -917,8 +919,8 @@ in with self; {
   ComparisonCR = derive2 { name="ComparisonCR"; version="1.0.4"; sha256="10xw3ppkzpc3njc409ln7g6bg33csf2ilw3f11hn60ry5xbnn82y"; depends=[boot CIFsmry cmprsk]; };
   ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.0.9"; sha256="1xvxkj0i59fq05df6szx4k32w2447mxcx3877l2myag4x6i6c74l"; depends=[muhaz survival survRM2 TSHRC]; };
   Compind = derive2 { name="Compind"; version="2.3"; sha256="0im7wpgigkd3nwg6crnp4c3ndd3b6763f0f4v512r9a13hm48ms0"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; };
-  ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.1"; sha256="185bwa45sknhxrg0m1cb7c2jblq6kxq3i9c0jzp3frxc5ybz0737"; depends=[colorspace ggplot2 patchwork scales]; };
-  Compositional = derive2 { name="Compositional"; version="5.2"; sha256="02mbspn456kkfsdiz481z7qjppf0giiglwp1yy3gsa40qrw23199"; depends=[codalm Directional doParallel emplik FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; };
+  ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.3"; sha256="1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv"; depends=[colorspace ggplot2 patchwork scales]; };
+  Compositional = derive2 { name="Compositional"; version="5.3"; sha256="1h5xv85r3vw3b62d8rbjx43cag4krldivfn09faga1lmg0zvbjwa"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; };
   CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; };
   Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; };
   ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; };
@@ -967,6 +969,7 @@ in with self; {
   CorrectedFDR = derive2 { name="CorrectedFDR"; version="1.1"; sha256="1p0gp7m7v6nly0kr4pkjwxaa941z80nfc8ji5w0y73i79d024c2s"; depends=[]; };
   CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; };
   Counterfactual = derive2 { name="Counterfactual"; version="1.2"; sha256="1spryxvnkdz728rl4nb7zlqhynnh0b4m7lnhq4i1n13gfsz1m5j4"; depends=[doParallel doRNG foreach Hmisc quantreg survival]; };
+  Counternull = derive2 { name="Counternull"; version="0.1.0"; sha256="1vnjhqif8ydnp6fb225hml1d2sincscs4q1vacbzxah628ac9yhp"; depends=[effsize]; };
   Countr = derive2 { name="Countr"; version="3.5.5"; sha256="0w2bdcr84zjcgcn2vrx2nib7dxq8vm12di3ni57z4yx4syskg3ik"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; };
   CountsEPPM = derive2 { name="CountsEPPM"; version="3.0"; sha256="0iw7sfrb4yyaagwm1f4q9av5zvzia1mp2ns287ppsw3k248lz0kb"; depends=[expm Formula lmtest numDeriv]; };
   CovCombR = derive2 { name="CovCombR"; version="1.0"; sha256="07yd0zbvc9db2jw6xigfhxnbkxwb3gxlmywadz7fs3rva2if2ffx"; depends=[CholWishart Matrix nlme]; };
@@ -1018,8 +1021,8 @@ in with self; {
   DArand = derive2 { name="DArand"; version="0.0.1.1"; sha256="0cmwqbhi073zj8ipgib6a6ss6h4r0x2w541xl24jyk5xz3c6s697"; depends=[]; };
   DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; };
   DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; };
-  DBI = derive2 { name="DBI"; version="1.1.1"; sha256="0i0kfyg43nryyka2bjlgz4x75w965224qp36wz1hl7a2lswb6ajp"; depends=[]; };
-  DBItest = derive2 { name="DBItest"; version="1.7.1"; sha256="0ql6n0alywfg7pcynbyzjj1ybv0c3jq6v9qf4qgylmdj8nq83zmz"; depends=[blob callr DBI desc hms lubridate R6 rlang testthat vctrs withr]; };
+  DBI = derive2 { name="DBI"; version="1.1.2"; sha256="0n2gf5flmcrkad7p0pzsnsgwjl5006yi7lyz9lisqxhw8xykgv2n"; depends=[]; };
+  DBItest = derive2 { name="DBItest"; version="1.7.2"; sha256="0zx58nq6l21g0sbrmrnmckw0x20i2f6lv81cczh02yrv4r968cmh"; depends=[blob callr DBI desc hms lubridate palmerpenguins R6 rlang testthat vctrs withr]; };
   DBfit = derive2 { name="DBfit"; version="2.0"; sha256="1b5fy4xya5k31937ccjsq1gj9y39lh1vb48jfc0sr56isrx0c496"; depends=[Rfit]; };
   DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; };
   DCCA = derive2 { name="DCCA"; version="0.1.1"; sha256="06xdx79r7dr14dlk5vgcyd8ar4sc72imlyk66bnia1kvlynvdy69"; depends=[checkmate]; };
@@ -1055,9 +1058,9 @@ in with self; {
   DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; };
   DET = derive2 { name="DET"; version="3.0.1"; sha256="0r2q1r4wc4nhhrr9bllxsp2w6ajja61mh34dyijjsfchx4025ljb"; depends=[doParallel pROC]; };
   DEoptim = derive2 { name="DEoptim"; version="2.2-6"; sha256="1qg2d4d076a99qdjfg0yyq5z1xc1zlwydwry00nj2rx0hdykjqwc"; depends=[]; };
-  DEoptimR = derive2 { name="DEoptimR"; version="1.0-9"; sha256="04k5gi0a5hbm6znzvjaipbmkacp694krkqs38dkbxx1gymsallb1"; depends=[]; };
+  DEoptimR = derive2 { name="DEoptimR"; version="1.0-10"; sha256="1m9ag073i7pbxsy74vkj0n4hjn6vmyc4n0k78nmslwwwmjh7nkvp"; depends=[]; };
   DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; };
-  DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.2"; sha256="08p5ncs4kgz9njskpfqqw3dymgyxv5pb5cwbsm6rsbb2k4w3bhn8"; depends=[MASS MVN]; };
+  DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.3"; sha256="0qxdvxsx13b6i9qd245hsrwbg5kg4lh45kkvhn62404sx20jx7jd"; depends=[BayesFactor MVN]; };
   DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; };
   DGCA = derive2 { name="DGCA"; version="1.0.2"; sha256="0k2a24ycagyxdx54dh9w8km25xhmmmhyyl26g76z4g5gqvcw092k"; depends=[matrixStats WGCNA]; };
   DGEobj = derive2 { name="DGEobj"; version="1.0.3"; sha256="0n2i6y2vhhypn3sgsysvfpxdfvhb3fq7pz2lv71bnn1fz3lghbsx"; depends=[assertthat GenomicRanges magrittr stringr]; };
@@ -1066,7 +1069,7 @@ in with self; {
   DGM = derive2 { name="DGM"; version="1.7.4"; sha256="1f59spd4bwx4d1gbjaizjxccaslw1fvf8pxa9nrxi07j6kq9mg0h"; depends=[coin data_table ggplot2 Rcpp RcppArmadillo reshape2]; };
   DHARMa = derive2 { name="DHARMa"; version="0.4.4"; sha256="1jpda8jpjpkkjh1cl28fzcx7fr7jz0czchsa0zr48wdg9zw7785m"; depends=[ape gap lme4 lmtest Matrix qgam]; };
   DHBins = derive2 { name="DHBins"; version="1.1"; sha256="1g69acac7pxw8x0d9czyds7xljhbv9d686c99a3y8b4vh7dnx62s"; depends=[ggplot2]; };
-  DHS_rates = derive2 { name="DHS.rates"; version="0.9.0"; sha256="1a8k68cd7x8gdra1bjk750jjy8p4wnbgmbw7wg14yi95kxyry3az"; depends=[crayon dplyr haven matrixStats reshape rlang survey]; };
+  DHS_rates = derive2 { name="DHS.rates"; version="0.9.1"; sha256="1mbp38kbs22wr1aq1gs2m7xcsk3gadik7yxlandhvhnrnacc4pd7"; depends=[crayon dplyr haven matrixStats reshape rlang survey]; };
   DICOMread = derive2 { name="DICOMread"; version="0.0.0.3"; sha256="1wrgx5b9w476g8s3jmccc027xdqbmcmnlhwf02g6j213rgy87p73"; depends=[matlabr]; };
   DIDmultiplegt = derive2 { name="DIDmultiplegt"; version="0.1.0"; sha256="1jzc2ixb92mxlm39xf3rmab9c8959xylnxacr4xqjnhi9hlkq30n"; depends=[assertthat dplyr fixest plotrix sampling stringr]; };
   DIFboost = derive2 { name="DIFboost"; version="0.3"; sha256="07x31ccy2l0drv1356g1v4jw71i7zqb3d0v856gsd3kpqhclpvx0"; depends=[mboost penalized stabs]; };
@@ -1079,7 +1082,7 @@ in with self; {
   DIMORA = derive2 { name="DIMORA"; version="0.2.0"; sha256="1ig2h2v199r5ryia35fx2540px7n2qshpma73599l82dr7k9hb33"; depends=[deSolve forecast minpack_lm numDeriv reshape2]; };
   DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; };
   DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; };
-  DIZutils = derive2 { name="DIZutils"; version="0.0.8"; sha256="1lyg9d54pi3ijcl7jmh75vaf80la808fj39l7k3hcniqb2l22hvq"; depends=[config data_table DBI Hmisc parsedate psych rapportools RJDBC RJSONIO RPostgres shiny shinyjs xml2]; };
+  DIZutils = derive2 { name="DIZutils"; version="0.0.9"; sha256="1vl8qyp3f5dw5f7qv1738gg7qvr43i29svapd62smb064cb9plld"; depends=[config data_table DBI Hmisc parsedate psych rapportools RJDBC RJSONIO RPostgres shiny shinyjs xml2]; };
   DIconvex = derive2 { name="DIconvex"; version="1.0