Added emboss

svn path=/nixpkgs/trunk/; revision=11993

1 files changed, 30 insertions, 0 deletions

diff --git a/pkgs/applications/science/biology/emboss/default.nix b/pkgs/applications/science/biology/emboss/default.nix
new file mode 100644
index 000000000000..427eb0a432ec
--- /dev/null
+++ b/pkgs/applications/science/biology/emboss/default.nix
@@ -0,0 +1,30 @@
+{stdenv, fetchurl, readline, perl, libX11, libpng, libXt, zlib}:
+
+stdenv.mkDerivation {
+  name = "emboss-5.0.0-9";
+  src = fetchurl {
+    url = ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-5.0.0.tar.gz;
+    sha256 = "1bj0bxfj97cgnk3w3123cqn5sq5xsbvzs8bzvqkgy6d7hadz1rk4";
+  };
+  patch = fetchurl {
+    url = ftp://emboss.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-9.gz;
+    sha256 = "1pfn5zdxrr71c3kwpdkzmmsqvdwkmynkvcr707vqh73h9cjhk3c1";
+  };
+
+  buildInputs = [readline perl libpng libX11 libXt zlib];
+
+  preConfigure = ''
+    gzip -d $patch | patch -p1
+  '';
+
+  meta = {
+    description     = "EMBOSS is 'The European Molecular Biology Open Software Suite'";
+    longDescription = ''EMBOSS is a free Open Source software analysis package
+    specially developed for the needs of the molecular biology (e.g. EMBnet)
+    user community. The software automatically copes with data in a variety of
+    formats and even allows transparent retrieval of sequence data from the
+    web.'';
+    license     = "GPL2";
+    homepage    = http://emboss.sourceforge.net/;
+  };
+}