summaryrefslogtreecommitdiffstats
path: root/pkgs/applications/science
diff options
context:
space:
mode:
authorProfpatsch <mail@profpatsch.de>2021-01-11 08:54:33 +0100
committerProfpatsch <mail@profpatsch.de>2021-01-11 10:38:22 +0100
commit4a7f99d55d299453a9c2397f90b33d1120669775 (patch)
tree9fca8e9c9970d0a00ce56dfe11b63ae76b00cf01 /pkgs/applications/science
parente87aef06e00c42b26789321454d7bd609548cc12 (diff)
treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r--pkgs/applications/science/astronomy/gpredict/default.nix4
-rw-r--r--pkgs/applications/science/astronomy/phd2/default.nix4
-rw-r--r--pkgs/applications/science/astronomy/siril/default.nix4
-rw-r--r--pkgs/applications/science/astronomy/xearth/default.nix4
-rw-r--r--pkgs/applications/science/astronomy/xplanet/default.nix4
-rw-r--r--pkgs/applications/science/biology/EZminc/default.nix4
-rw-r--r--pkgs/applications/science/biology/N3/default.nix4
-rw-r--r--pkgs/applications/science/biology/ants/default.nix4
-rw-r--r--pkgs/applications/science/biology/aragorn/default.nix4
-rw-r--r--pkgs/applications/science/biology/bayescan/default.nix4
-rw-r--r--pkgs/applications/science/biology/bcftools/default.nix4
-rw-r--r--pkgs/applications/science/biology/bedtools/default.nix4
-rw-r--r--pkgs/applications/science/biology/bftools/default.nix2
-rw-r--r--pkgs/applications/science/biology/blast/default.nix2
-rw-r--r--pkgs/applications/science/biology/bowtie/default.nix4
-rw-r--r--pkgs/applications/science/biology/bowtie2/default.nix4
-rw-r--r--pkgs/applications/science/biology/bwa/default.nix4
-rw-r--r--pkgs/applications/science/biology/cd-hit/default.nix4
-rw-r--r--pkgs/applications/science/biology/clustal-omega/default.nix4
-rw-r--r--pkgs/applications/science/biology/cmtk/default.nix4
-rw-r--r--pkgs/applications/science/biology/conglomerate/default.nix4
-rw-r--r--pkgs/applications/science/biology/dcm2niix/default.nix4
-rw-r--r--pkgs/applications/science/biology/delly/default.nix4
-rw-r--r--pkgs/applications/science/biology/diamond/default.nix4
-rw-r--r--pkgs/applications/science/biology/ecopcr/default.nix4
-rw-r--r--pkgs/applications/science/biology/eggnog-mapper/default.nix4
-rw-r--r--pkgs/applications/science/biology/est-sfs/default.nix4
-rw-r--r--pkgs/applications/science/biology/exonerate/default.nix4
-rw-r--r--pkgs/applications/science/biology/fastp/default.nix4
-rw-r--r--pkgs/applications/science/biology/freebayes/default.nix4
-rw-r--r--pkgs/applications/science/biology/hisat2/default.nix4
-rw-r--r--pkgs/applications/science/biology/hmmer/default.nix4
-rw-r--r--pkgs/applications/science/biology/igv/default.nix4
-rw-r--r--pkgs/applications/science/biology/inormalize/default.nix4
-rw-r--r--pkgs/applications/science/biology/itsx/default.nix4
-rw-r--r--pkgs/applications/science/biology/kallisto/default.nix4
-rw-r--r--pkgs/applications/science/biology/kent/default.nix4
-rw-r--r--pkgs/applications/science/biology/kssd/default.nix4
-rw-r--r--pkgs/applications/science/biology/last/default.nix4
-rw-r--r--pkgs/applications/science/biology/lumpy/default.nix4
-rw-r--r--pkgs/applications/science/biology/macse/default.nix4
-rw-r--r--pkgs/applications/science/biology/manta/default.nix4
-rw-r--r--pkgs/applications/science/biology/megahit/default.nix4
-rw-r--r--pkgs/applications/science/biology/minc-tools/default.nix4
-rw-r--r--pkgs/applications/science/biology/minc-widgets/default.nix4
-rw-r--r--pkgs/applications/science/biology/minia/default.nix4
-rw-r--r--pkgs/applications/science/biology/minimap2/default.nix4
-rw-r--r--pkgs/applications/science/biology/mni_autoreg/default.nix4
-rw-r--r--pkgs/applications/science/biology/mosdepth/default.nix4
-rw-r--r--pkgs/applications/science/biology/mrbayes/default.nix4
-rw-r--r--pkgs/applications/science/biology/muscle/default.nix4
-rw-r--r--pkgs/applications/science/biology/neuron/default.nix4
-rw-r--r--pkgs/applications/science/biology/niftyreg/default.nix4
-rw-r--r--pkgs/applications/science/biology/niftyseg/default.nix4
-rw-r--r--pkgs/applications/science/biology/octopus/default.nix4
-rw-r--r--pkgs/applications/science/biology/picard-tools/default.nix4
-rw-r--r--pkgs/applications/science/biology/platypus/default.nix4
-rw-r--r--pkgs/applications/science/biology/prodigal/default.nix4
-rw-r--r--pkgs/applications/science/biology/raxml/default.nix4
-rw-r--r--pkgs/applications/science/biology/sambamba/default.nix4
-rw-r--r--pkgs/applications/science/biology/samblaster/default.nix4
-rw-r--r--pkgs/applications/science/biology/samtools/default.nix4
-rw-r--r--pkgs/applications/science/biology/samtools/samtools_0_1_19.nix4
-rw-r--r--pkgs/applications/science/biology/seaview/default.nix4
-rw-r--r--pkgs/applications/science/biology/snpeff/default.nix4
-rw-r--r--pkgs/applications/science/biology/somatic-sniper/default.nix4
-rw-r--r--pkgs/applications/science/biology/sortmerna/default.nix4
-rw-r--r--pkgs/applications/science/biology/spades/default.nix4
-rw-r--r--pkgs/applications/science/biology/star/default.nix4
-rw-r--r--pkgs/applications/science/biology/strelka/default.nix4
-rw-r--r--pkgs/applications/science/biology/sumatools/default.nix4
-rw-r--r--pkgs/applications/science/biology/svaba/default.nix4
-rw-r--r--pkgs/applications/science/biology/tebreak/default.nix4
-rwxr-xr-xpkgs/applications/science/biology/trimal/default.nix4
-rw-r--r--pkgs/applications/science/biology/varscan/default.nix4
-rwxr-xr-xpkgs/applications/science/biology/vcftools/default.nix4
-rw-r--r--pkgs/applications/science/biology/whisper/default.nix4
-rw-r--r--pkgs/applications/science/chemistry/d-seams/default.nix2
-rw-r--r--pkgs/applications/science/chemistry/jmol/default.nix2
-rw-r--r--pkgs/applications/science/chemistry/molden/default.nix4
-rw-r--r--pkgs/applications/science/chemistry/octopus/default.nix4
-rw-r--r--pkgs/applications/science/chemistry/openmolcas/default.nix4
-rw-r--r--pkgs/applications/science/chemistry/quantum-espresso/default.nix4
-rw-r--r--pkgs/applications/science/chemistry/siesta/default.nix4
-rw-r--r--pkgs/applications/science/electronics/alliance/default.nix4
-rw-r--r--pkgs/applications/science/electronics/bitscope/common.nix4
-rw-r--r--pkgs/applications/science/electronics/csxcad/default.nix4
-rw-r--r--pkgs/applications/science/electronics/diylc/default.nix4
-rw-r--r--pkgs/applications/science/electronics/dsview/libsigrok4dsl.nix4
-rw-r--r--pkgs/applications/science/electronics/dsview/libsigrokdecode4dsl.nix4
-rw-r--r--pkgs/applications/science/electronics/eagle/eagle.nix4
-rw-r--r--pkgs/applications/science/electronics/eagle/eagle7.nix4
-rw-r--r--pkgs/applications/science/electronics/fparser/default.nix4
-rw-r--r--pkgs/applications/science/electronics/geda/default.nix4
-rw-r--r--pkgs/applications/science/electronics/gerbv/default.nix4
-rw-r--r--pkgs/applications/science/electronics/hal-hardware-analyzer/default.nix4
-rw-r--r--pkgs/applications/science/electronics/hyp2mat/default.nix4
-rw-r--r--pkgs/applications/science/electronics/kicad/i18n.nix4
-rw-r--r--pkgs/applications/science/electronics/librepcb/default.nix2
-rw-r--r--pkgs/applications/science/electronics/magic-vlsi/default.nix4
-rw-r--r--pkgs/applications/science/electronics/ngspice/default.nix4
-rw-r--r--pkgs/applications/science/electronics/pcb/default.nix4
-rw-r--r--pkgs/applications/science/electronics/verilator/default.nix4
-rw-r--r--pkgs/applications/science/electronics/verilog/default.nix4
-rw-r--r--pkgs/applications/science/electronics/vhd2vl/default.nix4
-rw-r--r--pkgs/applications/science/electronics/xcircuit/default.nix4
-rw-r--r--pkgs/applications/science/geometry/antiprism/default.nix4
-rw-r--r--pkgs/applications/science/geometry/drgeo/default.nix4
-rw-r--r--pkgs/applications/science/logic/abc/default.nix4
-rw-r--r--pkgs/applications/science/logic/acgtk/default.nix4
-rw-r--r--pkgs/applications/science/logic/aspino/default.nix4
-rw-r--r--pkgs/applications/science/logic/boolector/default.nix2
-rw-r--r--pkgs/applications/science/logic/btor2tools/default.nix4
-rw-r--r--pkgs/applications/science/logic/cadical/default.nix4
-rw-r--r--pkgs/applications/science/logic/cedille/default.nix2
-rw-r--r--pkgs/applications/science/logic/celf/default.nix4
-rw-r--r--pkgs/applications/science/logic/clprover/clprover.nix4
-rw-r--r--pkgs/applications/science/logic/coq/default.nix6
-rw-r--r--pkgs/applications/science/logic/coq2html/default.nix4
-rw-r--r--pkgs/applications/science/logic/cryptominisat/default.nix4
-rw-r--r--