Merge master into staging-next

11 files changed, 157 insertions, 74 deletions

diff --git a/pkgs/applications/science/astronomy/kstars/default.nix b/pkgs/applications/science/astronomy/kstars/default.nix
index 0b53e3e85ac3..fde8df610485 100644
--- a/pkgs/applications/science/astronomy/kstars/default.nix
+++ b/pkgs/applications/science/astronomy/kstars/default.nix
@@ -1,27 +1,30 @@
 {
-  mkDerivation, lib, fetchgit,
-  extra-cmake-modules,
+  stdenv, extra-cmake-modules, fetchurl,
 
   kconfig, kdoctools, kguiaddons, ki18n, kinit, kiconthemes, kio,
-  knewstuff, kplotting, kwidgetsaddons, kxmlgui,
+  knewstuff, kplotting, kwidgetsaddons, kxmlgui, wrapQtAppsHook,
 
   qtx11extras, qtwebsockets,
 
   eigen, zlib,
 
-  cfitsio, indilib, xplanet
+  cfitsio, indilib, xplanet, libnova, gsl
 }:
 
-mkDerivation {
-  name = "kstars";
-  
-  src = fetchgit {
-    url = "https://anongit.kde.org/kstars.git";
-    rev = "7acc527939280edd22823371dc4e22494c6c626a";
-    sha256 = "1n1lgi7p3dj893fdnzjbnrha40p4apl0dy8zppcabxwrb1khb84v";
+stdenv.mkDerivation rec {
+  pname = "kstars";
+  version = "3.4.3";
+
+  src = fetchurl {
+    url = "https://mirrors.mit.edu/kde/stable/kstars/kstars-${version}.tar.xz";
+    sha256 = "0j5yxg6ay6sic194skz6vjzg6yvrpb3gvypvs0frjrcjbsl1j4f8";
   };
-  
-  nativeBuildInputs = [ extra-cmake-modules kdoctools ];
+
+  patches = [
+    ./indi-fix.patch
+  ];
+
+  nativeBuildInputs = [ extra-cmake-modules kdoctools wrapQtAppsHook ];
   buildInputs = [
     kconfig kdoctools kguiaddons ki18n kinit kiconthemes kio
     knewstuff kplotting kwidgetsaddons kxmlgui
@@ -30,10 +33,14 @@ mkDerivation {
 
     eigen zlib
 
-    cfitsio indilib xplanet
+    cfitsio indilib xplanet libnova gsl
+  ];
+
+  cmakeFlags = [
+    "-DINDI_NIX_ROOT=${indilib}"
   ];
 
-  meta = with lib; {
+  meta = with stdenv.lib; {
     description = "Virtual planetarium astronomy software";
     homepage = "https://kde.org/applications/education/org.kde.kstars";
     longDescription = ''
diff --git a/pkgs/applications/science/astronomy/kstars/indi-fix.patch b/pkgs/applications/science/astronomy/kstars/indi-fix.patch
new file mode 100644
index 000000000000..9ff9f8a31dd3
--- /dev/null
+++ b/pkgs/applications/science/astronomy/kstars/indi-fix.patch
@@ -0,0 +1,50 @@
+--- CMakeLists.txt	2020-11-02 13:58:06.119743710 -0600
++++ kstars-3.4.3/CMakeLists.txt	2020-11-02 14:05:01.707799274 -0600
+@@ -4,5 +4,7 @@
+ set (KStars_VERSION_REVISION 3)
+ set (CMAKE_CXX_STANDARD 11)
+ 
++add_definitions(-DINDI_NIX_ROOT=${INDI_NIX_ROOT})
++
+ # Build KStars Lite with -DBUILD_KSTARS_LITE=ON
+ option(BUILD_KSTARS_LITE "Build KStars Lite" OFF)
+
+--- ksutils.cpp	2020-11-02 13:47:44.883596916 -0600
++++ kstars-3.4.3/kstars/auxiliary/ksutils.cpp	2020-11-02 17:41:44.961937090 -0600
+@@ -1076,6 +1076,9 @@
+ {
+     QString snap = QProcessEnvironment::systemEnvironment().value("SNAP");
+     QString flat = QProcessEnvironment::systemEnvironment().value("FLATPAK_DEST");
++#define STR_EXPAND(x) #x
++#define STR(x) STR_EXPAND(x)
++    QString nix = QString(STR(INDI_NIX_ROOT));
+ 
+     if (option == "fitsDir")
+     {
+@@ -1089,7 +1091,7 @@
+         if (flat.isEmpty() == false)
+             return flat + "/bin/indiserver";
+         else
+-            return snap + "/usr/bin/indiserver";
++            return nix + "/bin/indiserver";
+     }
+     else if (option == "INDIHubAgent")
+     {
+@@ -1099,7 +1101,7 @@
+         if (flat.isEmpty() == false)
+             return flat + "/bin/indihub-agent";
+         else
+-            return snap + "/usr/bin/indihub-agent";
++            return nix + "/bin/indihub-agent";
+     }
+     else if (option == "indiDriversDir")
+     {
+@@ -1109,7 +1111,7 @@
+         if (flat.isEmpty() == false)
+             return flat + "/share/indi";
+         else
+-            return snap + "/usr/share/indi";
++            return nix + "/share/indi";
+ #else
+         return QStandardPaths::locate(QStandardPaths::GenericDataLocation, "indi", QStandardPaths::LocateDirectory);
+ #endif
diff --git a/pkgs/applications/science/electronics/kicad/base.nix b/pkgs/applications/science/electronics/kicad/base.nix
index 3d83e905103b..7f11f483a9d0 100644
--- a/pkgs/applications/science/electronics/kicad/base.nix
+++ b/pkgs/applications/science/electronics/kicad/base.nix
@@ -55,17 +55,6 @@ stdenv.mkDerivation rec {
 
   src = kicadSrc;
 
-  # quick fix for #72248
-  # should be removed if a a more permanent fix is published
-  patches = [
-    (
-      fetchpatch {
-        url = "https://github.com/johnbeard/kicad/commit/dfb1318a3989e3d6f9f2ac33c924ca5030ea273b.patch";
-        sha256 = "00ifd3fas8lid8svzh1w67xc8kyx89qidp7gm633r014j3kjkgcd";
-      }
-    )
-  ];
-
   # tagged releases don't have "unknown"
   # kicad nightlies use git describe --dirty
   # nix removes .git, so its approximated here
diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix
index 7290503311d3..48a5779d207a 100644
--- a/pkgs/applications/science/electronics/kicad/default.nix
+++ b/pkgs/applications/science/electronics/kicad/default.nix
@@ -212,11 +212,10 @@ stdenv.mkDerivation rec {
 
   # why does $makeWrapperArgs have to be added explicitly?
   # $out and $program_PYTHONPATH don't exist when makeWrapperArgs gets set?
-  # kicad-ogltest's source seems to indicate that crashing is expected behaviour...
   installPhase =
     let
       tools = [ "kicad" "pcbnew" "eeschema" "gerbview" "pcb_calculator" "pl_editor" "bitmap2component" ];
-      utils = [ "dxf2idf" "idf2vrml" "idfcyl" "idfrect" "kicad2step" "kicad-ogltest" ];
+      utils = [ "dxf2idf" "idf2vrml" "idfcyl" "idfrect" "kicad2step" ];
     in
     (concatStringsSep "\n"
       (flatten [
diff --git a/pkgs/applications/science/electronics/kicad/update.sh b/pkgs/applications/science/electronics/kicad/update.sh
index 8c154c302c84..cfd78323b77a 100755
--- a/pkgs/applications/science/electronics/kicad/update.sh
+++ b/pkgs/applications/science/electronics/kicad/update.sh
@@ -110,7 +110,7 @@ for version in "${all_versions[@]}"; do
     echo "Checking src" >&2
     src_rev="$(${get_rev} "${gitlab}"/code/kicad.git "${version}" | cut -f1)"
     has_rev="$(grep -sm 1 "\"${pname}\"" -A 4 "${file}" | grep -sm 1 "${src_rev}" || true)"
-    has_hash="$(grep -sm 1 "\"${pname}\"" -A 5 "${file}" | grep -sm 1 "sha256")"
+    has_hash="$(grep -sm 1 "\"${pname}\"" -A 5 "${file}" | grep -sm 1 "sha256" || true)"
     if [[ -n ${has_rev} && -n ${has_hash} && -z ${clean} ]]; then
       echo "Reusing old ${pname}.src.sha256, already latest .rev" >&2
       grep -sm 1 "\"${pname}\"" -A 5 "${file}" | grep -sm 1 "rev" -A 1
@@ -130,7 +130,7 @@ for version in "${all_versions[@]}"; do
         echo "Checking i18n" >&2
         i18n_rev="$(${get_rev} "${i18n}" "${version}" | cut -f1)"
         has_rev="$(grep -sm 1 "\"${pname}\"" -A 11 "${file}" | grep -sm 1 "${i18n_rev}" || true)"
-        has_hash="$(grep -sm 1 "\"${pname}\"" -A 12 "${file}" | grep -sm 1 "i18n.sha256")"
+        has_hash="$(grep -sm 1 "\"${pname}\"" -A 12 "${file}" | grep -sm 1 "i18n.sha256" || true)"
         if [[ -n ${has_rev} && -n ${has_hash} && -z ${clean} ]]; then
           echo "Reusing old kicad-i18n-${today}.src.sha256, already latest .rev" >&2
           grep -sm 1 "\"${pname}\"" -A 12 "${file}" | grep -sm 1 "i18n" -A 1
@@ -146,7 +146,7 @@ for version in "${all_versions[@]}"; do
             url="${gitlab}/libraries/kicad-${lib}.git"
             lib_rev="$(${get_rev} "${url}" "${version}" | cut -f1 | head -n1)"
             has_rev="$(grep -sm 1 "\"${pname}\"" -A 19 "${file}" | grep -sm 1 "${lib_rev}" || true)"
-            has_hash="$(grep -sm 1 "\"${pname}\"" -A 20 "${file}" | grep -sm 1 "${lib}.sha256")"
+            has_hash="$(grep -sm 1 "\"${pname}\"" -A 20 "${file}" | grep -sm 1 "${lib}.sha256" || true)"
             if [[ -n ${has_rev} && -n ${has_hash} && -z ${clean} ]]; then
               echo "Reusing old kicad-${lib}-${today}.src.sha256, already latest .rev" >&2
               grep -sm 1 "\"${pname}\"" -A 20 "${file}" | grep -sm 1 "${lib}" -A 1
diff --git a/pkgs/applications/science/electronics/kicad/versions.nix b/pkgs/applications/science/electronics/kicad/versions.nix
index 1afb33b6fbd8..beadd1724e10 100644
--- a/pkgs/applications/science/electronics/kicad/versions.nix
+++ b/pkgs/applications/science/electronics/kicad/versions.nix
@@ -3,41 +3,41 @@
 {
   "kicad" = {
     kicadVersion = {
-      version = "5.1.6";
+      version =			"5.1.8";
       src = {
-        rev = "c6e7f7de7df655fd59b57823499efc443009de6b";
-        sha256 = "1pa3z0h0679jmgxlzc833h6q85b5paxdp69kf2h93vkaryj58622";
+        rev =			"db9833491010954bc27fac92c83d2864bd95c23c";
+        sha256 =		"08ni9j2lw2hjc1csk6rkydcxwdal6da17ch60zkjij5vfsif2hix";
       };
     };
     libVersion = {
-      version = "5.1.6";
+      version =			"5.1.8";
       libSources = {
-        i18n.rev = "5ad171ce5c8d90f4740517c2adecb310d8be51bd";
-        i18n.sha256 = "0qryi8xjm23ka363zfl7bbga0v5c31fr3d4nyxp3m168vkv9zhha";
-        symbols.rev = "5150eaa2a7d15cfc6bb1459c527c4ebaa66d7708";
-        symbols.sha256 = "12w3rdy085drlikkpb27n9ni7cyg9l0pqy7hnr86cxjcw3l5wcx6";
-        templates.rev = "9213d439f757e6049b7e54f3ea08272a0d0f44a9";
-        templates.sha256 = "1hppcsrkn4dk6ggby6ckh0q65qxkywrbyxa4lwpaf7pxjyv498xg";
-        footprints.rev = "a61b4e49762fb355f654e65a1c7db1aaf7bb2332";
-        footprints.sha256 = "1kmf91a5mmvj9izrv40mkaw1w36yjgn8daczd9rq2wlmd0rdp1zx";
-        packages3d.rev = "150ff1caf0b01dc04c84f4f966f4f88fedfa8f8c";
-        packages3d.sha256 = "0b9jglf77fy0n0r8xs4yqkv6zvipyfvp0z5dnqlzp32csy5aqpi1";
+        i18n.rev =		"78adcd19e7ed53f4889d6db65a33dd8ec2d323e9";
+        i18n.sha256 =		"0x0w2m6d3xfm22y4anp5j2j67iwzby149ynj6qjlw2kcsi8kwk1j";
+        symbols.rev =		"bf475af94877e8fd9cf80e667578ff61835e02bb";
+        symbols.sha256 =	"1ii3r813653ng2ycggnknqx4g3ja7dbm4qyxrf9aq48ws0xkvhx3";
+        templates.rev =		"1ccbaf3704e8ff4030d0915f71e051af621ef7d7";
+        templates.sha256 =	"1a8xfcbdbb4ylrb5m7n2jjk9kwvgmlx1pmnn2cwj327a2b3m4jjs";
+        footprints.rev =	"302ac78bac21825532f970fb92714fa5973ad79b";
+        footprints.sha256 =	"0gyqxryda273hjn2rv8dha461j9bjh054y5dlpiw1wiha65lrf9i";
+        packages3d.rev =	"7abe02f30fd79b8f4f66c01589861df7f8f72f04";
+        packages3d.sha256 =	"1szcin52fcsyb55bj7xq7lz6ig187dpz3lk7blwab7b9c4dn3c3y";
       };
     };
   };
   "kicad-unstable" = {
     kicadVersion = {
-      version =			"2020-10-09";
+      version =			"2020-11-07";
       src = {
-        rev =			"560428a70f0196fb4ade620042c5ddefc1685ebe";
-        sha256 =		"0rzn83bpl06v1d49lcvwfg93nirn684bqqq536zxhmjm0ayx29ka";
+        rev =			"9454f9df9245aea037d1ad5baf050c2d9101159c";
+        sha256 =		"03bd0dk234ihqnwrv4n40gi856xcjqgxplfwjzlwcq521gwykv30";
       };
     };
     libVersion = {
-      version =			"2020-10-09";
+      version =			"2020-11-07";
       libSources = {
-        i18n.rev =		"d24af2da8cab4ce1081c401909a4a880514e5549";
-        i18n.sha256 =		"0r0sv52k84sw4jxf10lrmzwmn58d2fv5h57fdrspnmvnh10q63xf";
+        i18n.rev =		"e89d9a89bec59199c1ade56ee2556591412ab7b0";
+        i18n.sha256 =		"04zaqyhj3qr4ymyd3k5vjpcna64j8klpsygcgjcv29s3rdi8glfl";
         symbols.rev =		"9c50f4333bafc5a1abf7786436db5ffb6a66758d";
         symbols.sha256 =	"06ic59svz0256isy93863i5ay4k8wshvp1kspnqrc776wmq03l3k";
         templates.rev =		"41eae4ccd3ac02fdb969e3aa272c07ab51dcf5af";
diff --git a/pkgs/applications/science/electronics/librepcb/default.nix b/pkgs/applications/science/electronics/librepcb/default.nix
index de01b095e381..494a5cf2931b 100644
--- a/pkgs/applications/science/electronics/librepcb/default.nix
+++ b/pkgs/applications/science/electronics/librepcb/default.nix
@@ -1,15 +1,15 @@
 { lib, mkDerivation, fetchFromGitHub, qtbase, qttools, qmake, wrapQtAppsHook }:
 
-mkDerivation {
+mkDerivation rec {
   pname = "librepcb";
-  version = "0.1.4";
+  version = "0.1.5";
 
   src = fetchFromGitHub {
     owner = "LibrePCB";
     repo = "LibrePCB";
     fetchSubmodules = true;
-    rev = "ae04eef5a71b5ba66ae2cee6b631c1c933ace535";
-    sha256 = "0wk5qny1jb6n4mwyyrs7syir3hmwxlwazcd80bpxharmsj7p0rzc";
+    rev = version;
+    sha256 = "0ag8h3id2c1k9ds22rfrvyhf2vjhkv82xnrdrz4n1hnlr9566vcx";
   };
 
   enableParallelBuilding = true;
diff --git a/pkgs/applications/science/math/maxima/default.nix b/pkgs/applications/science/math/maxima/default.nix
index 49ff0d5d5a05..1bf7d16f2904 100644
--- a/pkgs/applications/science/math/maxima/default.nix
+++ b/pkgs/applications/science/math/maxima/default.nix
@@ -1,10 +1,10 @@
-{ stdenv, fetchurl, fetchpatch, sbcl, texinfo, perl, python, makeWrapper, rlwrap ? null
-, tk ? null, gnuplot ? null, ecl ? null, ecl-fasl ? false
+{ stdenv, fetchurl, fetchpatch, sbcl, texinfo, perl, python, makeWrapper, autoreconfHook
+, rlwrap ? null, tk ? null, gnuplot ? null, ecl ? null, ecl-fasl ? false
 }:
 
 let
   name    = "maxima";
-  version = "5.42.2";
+  version = "5.44.0";
 
   searchPath =
     stdenv.lib.makeBinPath
@@ -16,14 +16,20 @@ stdenv.mkDerivation ({
 
   src = fetchurl {
     url = "mirror://sourceforge/${name}/${name}-${version}.tar.gz";
-    sha256 = "0kdncy6137sg3rradirxzj10mkcvafxd892zlclwhr9sa7b12zhn";
+    sha256 = "1v6jr5s6hhj6r18gfk6hgxk2qd6z1dxkrjq9ss2z1y6sqi45wgyr";
   };
 
+  nativeBuildInputs = [ autoreconfHook ];
+
   buildInputs = stdenv.lib.filter (x: x != null) [
     sbcl ecl texinfo perl python makeWrapper
     gnuplot   # required in the test suite
   ];
 
+  postPatch = ''
+    substituteInPlace doc/info/Makefile.am --replace "/usr/bin/env perl" "${perl}/bin/perl"
+  '';
+
   postInstall = ''
     # Make sure that maxima can find its runtime dependencies.
     for prog in "$out/bin/"*; do
@@ -57,13 +63,6 @@ stdenv.mkDerivation ({
       url = "https://git.sagemath.org/sage.git/plain/build/pkgs/maxima/patches/undoing_true_false_printing_patch.patch?id=07d6c37d18811e2b377a9689790a7c5e24da16ba";
       sha256 = "0fvi3rcjv6743sqsbgdzazy9jb6r1p1yq63zyj9fx42wd1hgf7yx";
     })
-
-    # upstream bug https://sourceforge.net/p/maxima/bugs/2520/ (not fixed)
-    # introduced in https://trac.sagemath.org/ticket/13364
-    (fetchpatch {
-      url = "https://git.sagemath.org/sage.git/plain/build/pkgs/maxima/patches/0001-taylor2-Avoid-blowing-the-stack-when-diff-expand-isn.patch?id=07d6c37d18811e2b377a9689790a7c5e24da16ba";
-      sha256 = "0xa0b6cr458zp7lc7qi0flv5ar0r3ivsqhjl0c3clv86di2y522d";
-    })
   ] ++ stdenv.lib.optionals ecl-fasl [
     # build fasl, needed for ECL support
     (fetchpatch {
@@ -74,11 +73,13 @@ stdenv.mkDerivation ({
 
   # The test suite is disabled since 5.42.2 because of the following issues:
   #
-  #   Errors found in /build/maxima-5.42.2/share/linearalgebra/rtest_matrixexp.mac, problems:
+  #   Error(s) found:
+  #   /build/maxima-5.44.0/share/linearalgebra/rtest_matrixexp.mac problems:
   #   (20 21 22)
-  #   Error found in rtest_arag, problem:
-  #   (error break)
-  #   3 tests failed out of 3,881 total tests.
+  #   Tests that were expected to fail but passed:
+  #   /build/maxima-5.44.0/share/vector/rtest_vect.mac problem:
+  #   (19)
+  #   3 tests failed out of 16,184 total tests.
   #
   # These failures don't look serious. It would be nice to fix them, but I
   # don't know how and probably won't have the time to find out.
diff --git a/pkgs/applications/science/misc/convertall/default.nix b/pkgs/applications/science/misc/convertall/default.nix
new file mode 100644
index 000000000000..63ed18c89b2f
--- /dev/null
+++ b/pkgs/applications/science/misc/convertall/default.nix
@@ -0,0 +1,37 @@
+{ stdenv, fetchFromGitHub, python3, wrapQtAppsHook }:
+
+let
+  inherit (python3.pkgs) wrapPython pyqt5;
+in stdenv.mkDerivation rec {
+  pname = "convertall";
+  version = "0.8.0";
+
+  src = fetchFromGitHub {
+    owner = "doug-101";
+    repo = "ConvertAll";
+    rev = "v${version}";
+    sha256 = "02xxasgbjbivsbhyfpn3cpv52lscdx5kc95s6ns1dvnmdg0fpng0";
+  };
+
+  nativeBuildInputs = [ python3 wrapPython wrapQtAppsHook ];
+
+  propagatedBuildInputs = [ pyqt5 ];
+
+  installPhase = ''
+    python3 install.py -p $out -x
+  '';
+
+  postFixup = ''
+    buildPythonPath $out
+    patchPythonScript $out/share/convertall/convertall.py
+    makeQtWrapper $out/share/convertall/convertall.py $out/bin/convertall
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = "https://convertall.bellz.org/";
+    description = "Graphical unit converter";
+    license = licenses.gpl2Plus;
+    maintainers = with maintainers; [ orivej ];
+    platforms = pyqt5.meta.platforms;
+  };
+}
diff --git a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix
index 151abb099f5b..bfa4a1f43391 100644
--- a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix
+++ b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix
@@ -9,11 +9,11 @@
 }:
 
 stdenv.mkDerivation {
-  name = "gromacs-2020.3";
+  name = "gromacs-2020.4";
 
   src = fetchurl {
-    url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-2020.3.tar.gz";
-    sha256 = "1acjrhcfzpqy2dncblhj97602jbg9gdha4q1bgji9nrj25lq6cch";
+    url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-2020.4.tar.gz";
+    sha256 = "1rplvgna60nqyb8nspaz3bfkwb044kv3zxdaa5whql5m441nj6am";
   };
 
   nativeBuildInputs = [ cmake ];
diff --git a/pkgs/applications/science/physics/xflr5/default.nix b/pkgs/applications/science/physics/xflr5/default.nix
index 85838b04cbf1..b2e5284796f8 100644
--- a/pkgs/applications/science/physics/xflr5/default.nix
+++ b/pkgs/applications/science/physics/xflr5/default.nix
@@ -20,4 +20,4 @@ stdenv.mkDerivation rec {
     maintainers = [ maintainers.esclear ];
     platforms = platforms.linux;
   };
-}
\ No newline at end of file
+}