diff options
author | Pjotr Prins <pjotr.public01@thebird.nl> | 2008-06-05 13:35:45 +0000 |
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committer | Pjotr Prins <pjotr.public01@thebird.nl> | 2008-06-05 13:35:45 +0000 |
commit | 13463a6f0171da354ad056ffd7aca4cc002c0f0f (patch) | |
tree | 6c2c307df239c43b01320b93620fc35aa2460018 /pkgs/applications/science | |
parent | c955f608a21404d65aee67993dee9a5b0f1372c9 (diff) |
MrBayes - a biology package for phylogeny
svn path=/nixpkgs/trunk/; revision=11986
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r-- | pkgs/applications/science/biology/mrbayes/builder.sh | 9 | ||||
-rw-r--r-- | pkgs/applications/science/biology/mrbayes/default.nix | 20 |
2 files changed, 29 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/mrbayes/builder.sh b/pkgs/applications/science/biology/mrbayes/builder.sh new file mode 100644 index 000000000000..5b3a54946fc9 --- /dev/null +++ b/pkgs/applications/science/biology/mrbayes/builder.sh @@ -0,0 +1,9 @@ +# builder for mrbayes - note: only builds on Unix + +source $stdenv/setup + +tar xvfz $src +cd mrbayes-* +make +mkdir -p $out/bin +cp -v mb $out/bin diff --git a/pkgs/applications/science/biology/mrbayes/default.nix b/pkgs/applications/science/biology/mrbayes/default.nix new file mode 100644 index 000000000000..78295faf69a8 --- /dev/null +++ b/pkgs/applications/science/biology/mrbayes/default.nix @@ -0,0 +1,20 @@ +{stdenv, fetchurl, readline}: + +stdenv.mkDerivation rec { + # FIXME: replace Makefile so we can build MPI & MAC support + + name = "mrbayes-3.1.2"; + src = fetchurl { + url = "mirror://sourceforge/mrbayes/${name}.tar.gz"; + sha256 = "1x7j8ca5wjrqrxmcpvd375ydm3s2pbkzykv8xfhg1jc037g560n6"; + }; + builder = ./builder.sh; + buildInputs = [readline]; + + meta = { + description = "Bayesian Inference of Phylogeny"; + longDescription = ''Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.''; + license = "GPL2"; + homepage = http://mrbayes.csit.fsu.edu/; + }; +} |