diff options
Diffstat (limited to 'pkgs/development/r-modules')
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 29b9bef348db..c54bf3832c7f 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -328,11 +328,13 @@ let CellBarcode = [ pkgs.zlib ]; cld3 = [ pkgs.protobuf ]; bnpmr = [ pkgs.gsl ]; + caviarpd = [ pkgs.cargo ]; cairoDevice = [ pkgs.gtk2.dev ]; Cairo = with pkgs; [ libtiff libjpeg cairo.dev xorg.libXt.dev fontconfig.lib ]; Cardinal = [ pkgs.which ]; chebpol = [ pkgs.fftw.dev ]; ChemmineOB = [ pkgs.pkg-config ]; + clarabel = [ pkgs.cargo ]; curl = [ pkgs.curl.dev ]; CytoML = [ pkgs.libxml2.dev ]; data_table = with pkgs; [ pkg-config zlib.dev ] ++ lib.optional stdenv.isDarwin pkgs.llvmPackages.openmp; @@ -357,7 +359,9 @@ let gslnls = [ pkgs.gsl ]; gert = [ pkgs.libgit2 ]; haven = with pkgs; [ zlib.dev ]; + hellorust = [ pkgs.cargo ]; h5vc = with pkgs; [ zlib.dev bzip2.dev xz.dev ]; + yyjsonr = with pkgs; [ zlib.dev ]; highs = [ pkgs.which pkgs.cmake ]; rbedrock = [ pkgs.zlib.dev pkgs.which pkgs.cmake ]; HiCseg = [ pkgs.gsl ]; @@ -441,6 +445,8 @@ let clustermq = [ pkgs.zeromq ]; SAVE = with pkgs; [ zlib bzip2 icu xz pcre ]; salso = [ pkgs.cargo ]; + ymd = [ pkgs.cargo ]; + arcpbf = [ pkgs.cargo ]; sdcTable = with pkgs; [ gmp glpk ]; seewave = with pkgs; [ fftw.dev libsndfile.dev ]; seqinr = [ pkgs.zlib.dev ]; @@ -450,6 +456,7 @@ let strawr = with pkgs; [ curl.dev ]; string2path = [ pkgs.cargo ]; terra = with pkgs; [ gdal proj geos ]; + tok = [ pkgs.cargo ]; apcf = with pkgs; [ geos ]; SemiCompRisks = [ pkgs.gsl ]; showtext = with pkgs; [ zlib libpng icu freetype.dev ]; @@ -531,6 +538,7 @@ let textshaping = [ pkgs.pkg-config ]; ragg = [ pkgs.pkg-config ]; qqconf = [ pkgs.pkg-config ]; + qspray = [ pkgs.pkg-config ]; vapour = [ pkgs.pkg-config ]; }; @@ -548,6 +556,8 @@ let bayesWatch = [ pkgs.boost.dev ]; clustermq = [ pkgs.pkg-config ]; coga = [ pkgs.gsl.dev ]; + mBvs = [ pkgs.gsl.dev ]; + rcontroll = [ pkgs.gsl.dev ]; deepSNV = with pkgs; [ xz.dev bzip2.dev zlib.dev ]; epialleleR = with pkgs; [ xz.dev bzip2.dev zlib.dev ]; gdalraster = with pkgs; [ gdal proj.dev sqlite.dev ]; @@ -569,11 +579,13 @@ let cairoDevice = [ pkgs.pkg-config ]; chebpol = [ pkgs.pkg-config ]; eds = [ pkgs.zlib.dev ]; + pgenlibr = [ pkgs.zlib.dev ]; fftw = [ pkgs.pkg-config ]; gdtools = [ pkgs.pkg-config ]; archive = [ pkgs.libarchive]; gdalcubes = with pkgs; [ proj.dev gdal sqlite.dev netcdf ]; SuperGauss = [ pkgs.pkg-config pkgs.fftw.dev]; + specklestar = [ pkgs.fftw.dev ]; cartogramR = [ pkgs.fftw.dev ]; jqr = [ pkgs.jq.lib ]; kza = [ pkgs.pkg-config ]; @@ -611,6 +623,7 @@ let tikzDevice = with pkgs; [ which texliveMedium ]; gridGraphics = [ pkgs.which ]; adimpro = with pkgs; [ which xorg.xdpyinfo ]; + tfevents = [ pkgs.protobuf ]; rsvg = [ pkgs.librsvg.dev ]; ssh = with pkgs; [ libssh ]; s2 = [ pkgs.openssl.dev ]; @@ -667,6 +680,7 @@ let seqbias = with pkgs; [ zlib.dev bzip2.dev xz.dev ]; sparkwarc = [ pkgs.zlib.dev ]; RoBMA = [ pkgs.jags ]; + RoBSA = [ pkgs.jags ]; pexm = [ pkgs.jags ]; rGEDI = with pkgs; [ libgeotiff.dev libaec zlib.dev hdf5.dev ]; rawrr = [ pkgs.mono ]; @@ -698,11 +712,13 @@ let PoissonMultinomial = [ pkgs.fftw.dev ]; rrd = [ pkgs.rrdtool ]; flowWorkspace = [ pkgs.zlib.dev ]; + RITCH = [ pkgs.zlib.dev ]; RcppMeCab = [ pkgs.mecab ]; PING = [ pkgs.gsl ]; RcppAlgos = [ pkgs.gmp.dev ]; RcppBigIntAlgos = [ pkgs.gmp.dev ]; spaMM = [ pkgs.gsl ]; + shrinkTVP = [ pkgs.gsl ]; unigd = with pkgs; [ cairo.dev libpng.dev ]; HilbertVisGUI = [ pkgs.gtkmm2.dev ]; textshaping = with pkgs; [ harfbuzz.dev freetype.dev fribidi libpng ]; @@ -711,7 +727,10 @@ let ijtiff = [ pkgs.libtiff ]; ragg = with pkgs; [ freetype.dev libpng.dev libtiff.dev zlib.dev libjpeg.dev bzip2.dev ] ++ lib.optional stdenv.isDarwin lerc.dev; qqconf = [ pkgs.fftw.dev ]; + spFW = [ pkgs.fftw.dev ]; + qspray = with pkgs; [ gmp.dev mpfr.dev ]; vapour = with pkgs; [ proj.dev gdal ]; + MedianaDesigner = [ pkgs.zlib.dev ]; ChemmineOB = [ pkgs.eigen ]; }; @@ -796,6 +815,7 @@ let "likeLTD" "logmult" "loon" + "loon_ggplot" "LS2Wstat" "MareyMap" "memgene" @@ -833,6 +853,7 @@ let "RandomFields" "rareNMtests" "rAverage" + "rfviz" "RclusTool" "Rcmdr" "RcmdrPlugin_coin" @@ -916,10 +937,13 @@ let "connections" "csodata" "DiceView" + "facmodTS" + "margaret" "MSnID" "OmnipathR" "precommit" "protGear" + "PCRA" "PSCBS" "iemisc" "repmis" @@ -938,10 +962,14 @@ let "ACNE" "APAlyzer" "EstMix" + "Patterns" "PECA" "Quartet" "ShinyQuickStarter" "TIN" + "cfdnakit" + "CaDrA" + "GNOSIS" "TotalCopheneticIndex" "TreeDist" "biocthis" @@ -971,6 +999,8 @@ let "PhIPData" # tries to download something from a DB "RBioFormats" # tries to download jar during load test "pbdMPI" # tries to run MPI processes + "CTdata" # tries to connect to ExperimentHub + "rfaRm" # tries to connect to Ebi "data_table" # fails to rename shared library before check "coMethDMR" # tries to connect to ExperimentHub "multiMiR" # tries to connect to DB @@ -1105,6 +1135,10 @@ let postPatch = "patchShebangs configure"; }); + surtvep = old.surtvep.overrideAttrs (attrs: { + postPatch = "patchShebangs configure"; + }); + purrr = old.purrr.overrideAttrs (attrs: { patchPhase = "patchShebangs configure"; }); @@ -1117,6 +1151,20 @@ let postPatch = "patchShebangs configure"; }); + zoomerjoin = old.zoomerjoin.overrideAttrs (attrs: { + nativeBuildInputs = [ pkgs.cargo ] ++ attrs.nativeBuildInputs; + postPatch = "patchShebangs configure"; + }); + + b64 = old.b64.overrideAttrs (attrs: { + nativeBuildInputs = [ pkgs.cargo ] ++ attrs.nativeBuildInputs; + postPatch = "patchShebangs configure"; + }); + + ocf = old.ocf.overrideAttrs (attrs: { + postPatch = "patchShebangs configure"; + }); + data_table = old.data_table.overrideAttrs (attrs: { env = (attrs.env or { }) // { NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -fopenmp"; |