diff options
27 files changed, 90 insertions, 102 deletions
diff --git a/pkgs/applications/graphics/paraview/default.nix b/pkgs/applications/graphics/paraview/default.nix index 6e4738dd07c1..7bbff5499f65 100644 --- a/pkgs/applications/graphics/paraview/default.nix +++ b/pkgs/applications/graphics/paraview/default.nix @@ -1,6 +1,6 @@ { boost, cmake, fetchFromGitHub, ffmpeg, qtbase, qtx11extras, qttools, qtxmlpatterns, qtsvg, gdal, gfortran, libXt, makeWrapper, - mkDerivation, ninja, openmpi, python3, lib, stdenv, tbb, libGLU, libGL }: + mkDerivation, ninja, mpi, python3, lib, stdenv, tbb, libGLU, libGL }: mkDerivation rec { pname = "paraview"; @@ -65,7 +65,7 @@ mkDerivation rec { buildInputs = [ libGLU libGL libXt - openmpi + mpi tbb boost ffmpeg diff --git a/pkgs/applications/science/biology/migrate/default.nix b/pkgs/applications/science/biology/migrate/default.nix index 0e2aa1c1a791..ba55898e4f9d 100644 --- a/pkgs/applications/science/biology/migrate/default.nix +++ b/pkgs/applications/science/biology/migrate/default.nix @@ -1,4 +1,4 @@ -{ gccStdenv, fetchurl, zlib, openmpi }: +{ gccStdenv, fetchurl, zlib, mpi }: gccStdenv.mkDerivation rec { version = "3.7.2"; @@ -9,7 +9,7 @@ gccStdenv.mkDerivation rec { sha256 = "1p2364ffjc56i82snzvjpy6pkf6wvqwvlvlqxliscx2c303fxs8v"; }; - buildInputs = [ zlib openmpi ]; + buildInputs = [ zlib mpi ]; setSourceRoot = ''sourceRoot=$(echo */src)''; buildFlags = [ "thread" "mpis" ]; preInstall = "mkdir -p $out/man/man1"; diff --git a/pkgs/applications/science/biology/neuron/default.nix b/pkgs/applications/science/biology/neuron/default.nix index 154965b15214..7bfef3a82fed 100644 --- a/pkgs/applications/science/biology/neuron/default.nix +++ b/pkgs/applications/science/biology/neuron/default.nix @@ -8,7 +8,8 @@ , readline , which , python ? null -, mpi ? null +, useMpi ? false +, mpi , iv }: @@ -17,7 +18,8 @@ stdenv.mkDerivation rec { version = "7.5"; nativeBuildInputs = [ which pkg-config automake autoconf libtool ]; - buildInputs = [ ncurses readline python mpi iv ]; + buildInputs = [ ncurses readline python iv ] + ++ lib.optional useMpi mpi; src = fetchurl { url = "https://www.neuron.yale.edu/ftp/neuron/versions/v${version}/nrn-${version}.tar.gz"; @@ -54,7 +56,7 @@ stdenv.mkDerivation rec { configureFlags = with lib; [ "--with-readline=${readline}" "--with-iv=${iv}" ] ++ optionals (python != null) [ "--with-nrnpython=${python.interpreter}" ] - ++ (if mpi != null then ["--with-mpi" "--with-paranrn"] + ++ (if useMpi then ["--with-mpi" "--with-paranrn"] else ["--without-mpi"]); @@ -84,4 +86,3 @@ stdenv.mkDerivation rec { platforms = platforms.x86_64 ++ platforms.i686; }; } - diff --git a/pkgs/applications/science/biology/raxml/default.nix b/pkgs/applications/science/biology/raxml/default.nix index 4f9b5aca1b2d..6e747e318f57 100644 --- a/pkgs/applications/science/biology/raxml/default.nix +++ b/pkgs/applications/science/biology/raxml/default.nix @@ -1,7 +1,7 @@ { lib, stdenv , fetchFromGitHub -, pkgs -, mpi ? false +, useMpi ? false +, mpi }: stdenv.mkDerivation rec { @@ -15,16 +15,16 @@ stdenv.mkDerivation rec { sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh"; }; - buildInputs = lib.optionals mpi [ pkgs.openmpi ]; + buildInputs = lib.optionals useMpi [ mpi ]; # TODO darwin, AVX and AVX2 makefile targets - buildPhase = if mpi then '' + buildPhase = if useMpi then '' make -f Makefile.MPI.gcc '' else '' make -f Makefile.SSE3.PTHREADS.gcc ''; - installPhase = if mpi then '' + installPhase = if useMpi then '' mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin '' else '' mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin diff --git a/pkgs/applications/science/chemistry/openmolcas/default.nix b/pkgs/applications/science/chemistry/openmolcas/default.nix index 1297e595b9a8..4bd88456b8f6 100644 --- a/pkgs/applications/science/chemistry/openmolcas/default.nix +++ b/pkgs/applications/science/chemistry/openmolcas/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitLab, cmake, gfortran, perl , openblas, hdf5-cpp, python3, texlive -, armadillo, openmpi, globalarrays, openssh +, armadillo, mpi, globalarrays, openssh , makeWrapper, fetchpatch } : @@ -33,7 +33,7 @@ in stdenv.mkDerivation { hdf5-cpp python armadillo - openmpi + mpi globalarrays openssh ]; diff --git a/pkgs/applications/science/chemistry/quantum-espresso/default.nix b/pkgs/applications/science/chemistry/quantum-espresso/default.nix index c7b1f9010468..6d70e9f984f6 100644 --- a/pkgs/applications/science/chemistry/quantum-espresso/default.nix +++ b/pkgs/applications/science/chemistry/quantum-espresso/default.nix @@ -1,6 +1,7 @@ { lib, stdenv, fetchurl , gfortran, fftw, blas, lapack -, mpi ? null +, useMpi ? false +, mpi }: stdenv.mkDerivation rec { @@ -21,9 +22,9 @@ stdenv.mkDerivation rec { ''; buildInputs = [ fftw blas lapack gfortran ] - ++ (lib.optionals (mpi != null) [ mpi ]); + ++ (lib.optionals useMpi [ mpi ]); -configureFlags = if (mpi != null) then [ "LD=${mpi}/bin/mpif90" ] else [ "LD=${gfortran}/bin/gfortran" ]; +configureFlags = if useMpi then [ "LD=${mpi}/bin/mpif90" ] else [ "LD=${gfortran}/bin/gfortran" ]; makeFlags = [ "all" ]; diff --git a/pkgs/applications/science/chemistry/siesta/default.nix b/pkgs/applications/science/chemistry/siesta/default.nix index 0df953f71067..02ff4c1ca440 100644 --- a/pkgs/applications/science/chemistry/siesta/default.nix +++ b/pkgs/applications/science/chemistry/siesta/default.nix @@ -1,6 +1,7 @@ { lib, stdenv, fetchurl -, gfortran, blas, lapack -, mpi ? null, scalapack +, gfortran, blas, lapack, scalapack +, useMpi ? false +, mpi }: stdenv.mkDerivation { @@ -17,7 +18,7 @@ stdenv.mkDerivation { }; buildInputs = [ blas lapack gfortran ] - ++ (lib.optionals (mpi != null) [ mpi scalapack ]); + ++ lib.optionals useMpi [ mpi scalapack ]; enableParallelBuilding = true; @@ -29,7 +30,7 @@ stdenv.mkDerivation { cp gfortran.make arch.make ''; - preBuild = if (mpi != null) then '' + preBuild = if useMpi then '' makeFlagsArray=( CC="mpicc" FC="mpifort" FPPFLAGS="-DMPI" MPI_INTERFACE="libmpi_f90.a" MPI_INCLUDE="." diff --git a/pkgs/applications/science/electronics/openems/default.nix b/pkgs/applications/science/electronics/openems/default.nix index e1063f8e26cf..64afe3222c2d 100644 --- a/pkgs/applications/science/electronics/openems/default.nix +++ b/pkgs/applications/science/electronics/openems/default.nix @@ -11,16 +11,15 @@ , cmake , octave , gl2ps +, mpi , withQcsxcad ? true , withMPI ? false , withHyp2mat ? true , qcsxcad ? null -, openmpi ? null , hyp2mat ? null }: assert withQcsxcad -> qcsxcad != null; -assert withMPI -> openmpi != null; assert withHyp2mat -> hyp2mat != null; stdenv.mkDerivation { @@ -50,7 +49,7 @@ stdenv.mkDerivation { csxcad (octave.override { inherit hdf5; }) ] ++ lib.optionals withQcsxcad [ qcsxcad ] - ++ lib.optionals withMPI [ openmpi ] + ++ lib.optionals withMPI [ mpi ] ++ lib.optionals withHyp2mat [ hyp2mat ]; postFixup = '' diff --git a/pkgs/applications/science/math/cntk/default.nix b/pkgs/applications/science/math/cntk/default.nix index a348210179e2..e15e2a43d774 100644 --- a/pkgs/applications/science/math/cntk/default.nix +++ b/pkgs/applications/science/math/cntk/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchgit, fetchFromGitHub, cmake -, openblas, blas, lapack, opencv3, libzip, boost, protobuf, openmpi +, openblas, blas, lapack, opencv3, libzip, boost, protobuf, mpi , onebitSGDSupport ? false , cudaSupport ? false, addOpenGLRunpath, cudatoolkit, nvidia_x11 , cudnnSupport ? cudaSupport, cudnn @@ -33,7 +33,7 @@ in stdenv.mkDerivation rec { # Force OpenMPI to use g++ in PATH. OMPI_CXX = "g++"; - buildInputs = [ openblas opencv3 libzip boost protobuf openmpi ] + buildInputs = [ openblas opencv3 libzip boost protobuf mpi ] ++ lib.optional cudaSupport cudatoolkit ++ lib.optional cudnnSupport cudnn; @@ -43,7 +43,7 @@ in stdenv.mkDerivation rec { "--with-openblas=${openblas}" "--with-boost=${boost.dev}" "--with-protobuf=${protobuf}" - "--with-mpi=${openmpi}" + "--with-mpi=${mpi}" "--cuda=${if cudaSupport then "yes" else "no"}" # FIXME "--asgd=no" diff --git a/pkgs/applications/science/math/getdp/default.nix b/pkgs/applications/science/math/getdp/default.nix index 915c7e1147f1..39d9c866caef 100644 --- a/pkgs/applications/science/math/getdp/default.nix +++ b/pkgs/applications/science/math/getdp/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, cmake, gfortran, blas, lapack, openmpi, petsc, python3 }: +{ lib, stdenv, fetchurl, cmake, gfortran, blas, lapack, mpi, petsc, python3 }: stdenv.mkDerivation rec { name = "getdp-${version}"; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ cmake gfortran ]; - buildInputs = [ blas lapack openmpi petsc python3 ]; + buildInputs = [ blas lapack mpi petsc python3 ]; meta = with lib; { description = "A General Environment for the Treatment of Discrete Problems"; diff --git a/pkgs/applications/science/math/scotch/default.nix b/pkgs/applications/science/math/scotch/default.nix index 6f8753ff38ac..b6613f25cbc7 100644 --- a/pkgs/applications/science/math/scotch/default.nix +++ b/pkgs/applications/science/math/scotch/default.nix @@ -1,11 +1,11 @@ -{ lib, stdenv, fetchurl, bison, openmpi, flex, zlib}: +{ lib, stdenv, fetchurl, bison, mpi, flex, zlib}: stdenv.mkDerivation rec { version = "6.0.4"; pname = "scotch"; src_name = "scotch_${version}"; - buildInputs = [ bison openmpi flex zlib ]; + buildInputs = [ bison mpi flex zlib ]; src = fetchurl { url = "https://gforge.inria.fr/frs/download.php/file/34618/${src_name}.tar.gz"; diff --git a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix index c40faddbbf94..bdec2ccc669f 100644 --- a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix +++ b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix @@ -3,10 +3,10 @@ , cmake , hwloc , fftw -, openmpi , perl , singlePrec ? true , mpiEnabled ? false +, mpi , cpuAcceleration ? null }: @@ -33,7 +33,7 @@ in stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; buildInputs = [ fftw perl hwloc ] - ++ (lib.optionals mpiEnabled [ openmpi ]); + ++ (lib.optionals mpiEnabled [ mpi ]); cmakeFlags = [ "-DGMX_SIMD:STRING=${SIMD cpuAcceleration}" diff --git a/pkgs/applications/science/molecular-dynamics/lammps/default.nix b/pkgs/applications/science/molecular-dynamics/lammps/default.nix index 123afef03e86..51ce64115ea5 100644 --- a/pkgs/applications/science/molecular-dynamics/lammps/default.nix +++ b/pkgs/applications/science/molecular-dynamics/lammps/default.nix @@ -1,6 +1,7 @@ { lib, stdenv, fetchFromGitHub , libpng, gzip, fftw, blas, lapack -, mpi ? null +, withMPI ? false +, mpi }: let packages = [ "asphere" "body" "class2" "colloid" "compress" "coreshell" @@ -8,7 +9,6 @@ let packages = [ "opt" "peri" "qeq" "replica" "rigid" "shock" "snap" "srd" "user-reaxc" ]; lammps_includes = "-DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64"; - withMPI = (mpi != null); in stdenv.mkDerivation rec { # LAMMPS has weird versioning converted to ISO 8601 format diff --git a/pkgs/applications/science/physics/elmerfem/default.nix b/pkgs/applications/science/physics/elmerfem/default.nix index 6fa25ce66aeb..5033b28bd3b3 100644 --- a/pkgs/applications/science/physics/elmerfem/default.nix +++ b/pkgs/applications/science/physics/elmerfem/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, git, gfortran, openmpi, blas, liblapack, qt4, qwt6_qt4, pkg-config }: +{ lib, stdenv, fetchFromGitHub, cmake, git, gfortran, mpi, blas, liblapack, qt4, qwt6_qt4, pkg-config }: stdenv.mkDerivation rec { pname = "elmerfem"; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { hardeningDisable = [ "format" ]; nativeBuildInputs = [ cmake pkg-config git ]; - buildInputs = [ gfortran openmpi blas liblapack qt4 qwt6_qt4 ]; + buildInputs = [ gfortran mpi blas liblapack qt4 qwt6_qt4 ]; preConfigure = '' patchShebangs ./ diff --git a/pkgs/development/libraries/boost/generic.nix b/pkgs/development/libraries/boost/generic.nix index 5a2b437d41dc..abff1268bfae 100644 --- a/pkgs/development/libraries/boost/generic.nix +++ b/pkgs/development/libraries/boost/generic.nix @@ -14,7 +14,8 @@ , enableNumpy ? false , taggedLayout ? ((enableRelease && enableDebug) || (enableSingleThreaded && enableMultiThreaded) || (enableShared && enableStatic)) , patches ? [] -, mpi ? null +, useMpi ? false +, mpi , extraB2Args ? [] # Attributes inherit from specific versions @@ -94,7 +95,7 @@ let ++ optional (variant == "release") "debug-symbols=off" ++ optional (toolset != null) "toolset=${toolset}" ++ optional (!enablePython) "--without-python" - ++ optional (mpi != null || stdenv.hostPlatform != stdenv.buildPlatform) "--user-config=user-config.jam" + ++ optional (useMpi || stdenv.hostPlatform != stdenv.buildPlatform) "--user-config=user-config.jam" ++ optionals (stdenv.hostPlatform.libc == "msvcrt") [ "threadapi=win32" ] ++ extraB2Args @@ -140,7 +141,7 @@ stdenv.mkDerivation { substituteInPlace tools/build/src/tools/clang-darwin.jam \ --replace '@rpath/$(<[1]:D=)' "$out/lib/\$(<[1]:D=)"; fi; - '' + optionalString (mpi != null) '' + '' + optionalString useMpi '' cat << EOF >> user-config.jam using mpi : ${mpi}/bin/mpiCC ; EOF diff --git a/pkgs/development/libraries/globalarrays/default.nix b/pkgs/development/libraries/globalarrays/default.nix index 049e262bb17b..1f70946cbcec 100644 --- a/pkgs/development/libraries/globalarrays/default.nix +++ b/pkgs/development/libraries/globalarrays/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchpatch, fetchFromGitHub, autoreconfHook -, blas, gfortran, openssh, openmpi +, blas, gfortran, openssh, mpi } : let @@ -17,7 +17,7 @@ in stdenv.mkDerivation { }; nativeBuildInputs = [ autoreconfHook ]; - buildInputs = [ openmpi blas gfortran openssh ]; + buildInputs = [ mpi blas gfortran openssh ]; preConfigure = '' configureFlagsArray+=( "--enable-i8" \ diff --git a/pkgs/development/libraries/precice/default.nix b/pkgs/development/libraries/precice/default.nix index e9e67737d328..10a80ebb91e8 100644 --- a/pkgs/development/libraries/precice/default.nix +++ b/pkgs/development/libraries/precice/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, gcc, boost, eigen, libxml2, openmpi, python3, petsc }: +{ lib, stdenv, fetchFromGitHub, cmake, gcc, boost, eigen, libxml2, mpi, python3, petsc }: stdenv.mkDerivation rec { pname = "precice"; @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE = lib.optional stdenv.isDarwin [ "-D_GNU_SOURCE" ]; nativeBuildInputs = [ cmake gcc ]; - buildInputs = [ boost eigen libxml2 openmpi python3 python3.pkgs.numpy ]; + buildInputs = [ boost eigen libxml2 mpi python3 python3.pkgs.numpy ]; meta = { description = "preCICE stands for Precise Code Interaction Coupling Environment"; diff --git a/pkgs/development/python-modules/cntk/default.nix b/pkgs/development/python-modules/cntk/default.nix index ce388bb1d5d2..b1bba8cf1e0f 100644 --- a/pkgs/development/python-modules/cntk/default.nix +++ b/pkgs/development/python-modules/cntk/default.nix @@ -3,7 +3,7 @@ , pkgs , numpy , scipy -, openmpi +, mpi , enum34 , protobuf , pip @@ -17,8 +17,8 @@ in buildPythonPackage { inherit (cntk) name version src; - nativeBuildInputs = [ swig openmpi ]; - buildInputs = [ cntk openmpi ]; + nativeBuildInputs = [ swig mpi ]; + buildInputs = [ cntk mpi ]; propagatedBuildInputs = [ numpy scipy enum34 protobuf pip ]; CNTK_LIB_PATH = "${cntk}/lib"; @@ -28,7 +28,7 @@ buildPythonPackage { postPatch = '' cd bindings/python - sed -i 's,"libmpi.so.12","${openmpi}/lib/libmpi.so",g' cntk/train/distributed.py + sed -i 's,"libmpi.so.12","${mpi}/lib/libmpi.so",g' cntk/train/distributed.py # Remove distro and libs checks; they aren't compatible with NixOS and besides we guarantee # compatibility by providing a package. diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix index f072972937a9..822586bf190c 100644 --- a/pkgs/development/python-modules/pytorch/default.nix +++ b/pkgs/development/python-modules/pytorch/default.nix @@ -1,7 +1,7 @@ { stdenv, lib, fetchFromGitHub, fetchpatch, buildPythonPackage, python, cudaSupport ? false, cudatoolkit ? null, cudnn ? null, nccl ? null, magma ? null, mklDnnSupport ? true, useSystemNccl ? true, - openMPISupport ? false, openmpi ? null, + MPISupport ? false, mpi, buildDocs ? false, cudaArchList ? null, @@ -29,8 +29,6 @@ isPy3k, pythonOlder }: -assert !openMPISupport || openmpi != null; - # assert that everything needed for cuda is present and that the correct cuda versions are used assert !cudaSupport || cudatoolkit != null; assert cudnn == null || cudatoolkit != null; @@ -38,7 +36,7 @@ assert !cudaSupport || (let majorIs = lib.versions.major cudatoolkit.version; in majorIs == "9" || majorIs == "10" || majorIs == "11"); # confirm that cudatoolkits are sync'd across dependencies -assert !(openMPISupport && cudaSupport) || openmpi.cudatoolkit == cudatoolkit; +assert !(MPISupport && cudaSupport) || mpi.cudatoolkit == cudatoolkit; assert !cudaSupport || magma.cudatoolkit == cudatoolkit; let @@ -224,7 +222,7 @@ in buildPythonPackage rec { typing-extensions # the following are required for tensorboard support pillow six future tensorflow-tensorboard protobuf - ] ++ lib.optionals openMPISupport [ openmpi ] + ] ++ lib.optionals MPISupport [ mpi ] ++ lib.optionals (pythonOlder "3.7") [ dataclasses ]; checkInputs = [ hypothesis ninja psutil ]; diff --git a/pkgs/development/python-modules/tensorflow/default.nix b/pkgs/development/python-modules/tensorflow/default.nix index 342a87a6e8d5..9f64a689e2b8 100644 --- a/pkgs/development/python-modules/tensorflow/default.nix +++ b/pkgs/development/python-modules/tensorflow/default.nix @@ -11,7 +11,7 @@ # Common deps , git, pybind11, which, binutils, glibcLocales, cython, perl # Common libraries -, jemalloc, openmpi, gast, grpc, sqlite, boringssl, jsoncpp +, jemalloc, mpi, gast, grpc, sqlite, boringssl, jsoncpp , curl, snappy, flatbuffers-core, lmdb-core, icu, double-conversion, libpng, libjpeg_turbo, giflib # Upsteam by default includes cuda support since tensorflow 1.15. We could do # that in nix as well. It would make some things easier and less confusing, but @@ -129,7 +129,7 @@ let buildInputs = [ jemalloc - openmpi + mpi glibcLocales git diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index e79504bdaab3..e827c9b807fd 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -237,7 +237,7 @@ let BayesSAE = [ pkgs.gsl_1 ]; BayesVarSel = [ pkgs.gsl_1 ]; BayesXsrc = [ pkgs.readline.dev pkgs.ncurses ]; - bigGP = [ pkgs.openmpi ]; + bigGP = [ pkgs.mpi ]; bio3d = [ pkgs.zlib ]; BiocCheck = [ pkgs.which ]; Biostrings = [ pkgs.zlib ]; @@ -284,8 +284,8 @@ let n1qn1 = [ pkgs.gfortran ]; odbc = [ pkgs.unixODBC ]; pander = [ pkgs.pandoc pkgs.which ]; - pbdMPI = [ pkgs.openmpi ]; - pbdPROF = [ pkgs.openmpi ]; + pbdMPI = [ pkgs.mpi ]; + pbdPROF = [ pkgs.mpi ]; pbdZMQ = lib.optionals stdenv.isDarwin [ pkgs.which ]; pdftools = [ pkgs.poppler.dev ]; phytools = [ pkgs.which ]; @@ -309,14 +309,14 @@ let RGtk2 = [ pkgs.gtk2.dev ]; rhdf5 = [ pkgs.zlib ]; Rhdf5lib = [ pkgs.zlib ]; - Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ]; + Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.mpi pkgs.pcre.dev ]; Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf pkgs.bzip2.dev pkgs.lzma.dev pkgs.curl.dev ]; rjags = [ pkgs.jags ]; rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ]; Rlibeemd = [ pkgs.gsl_1 ]; rmatio = [ pkgs.zlib.dev ]; Rmpfr = [ pkgs.gmp pkgs.mpfr.dev ]; - Rmpi = [ pkgs.openmpi ]; + Rmpi = [ pkgs.mpi ]; RMySQL = [ pkgs.zlib pkgs.libmysqlclient pkgs.openssl.dev ]; RNetCDF = [ pkgs.netcdf pkgs.udunits ]; RODBC = [ pkgs.libiodbc ]; diff --git a/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix b/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix index 310657589141..c3cea53189ba 100644 --- a/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix +++ b/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix @@ -245,7 +245,7 @@ self: super: horovod = super.horovod.overridePythonAttrs ( old: { - propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.openmpi ]; + propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.mpi ]; } ); @@ -528,14 +528,14 @@ self: super: { } { mpi = { - mpicc = "${pkgs.openmpi.outPath}/bin/mpicc"; + mpicc = "${pkgs.mpi.outPath}/bin/mpicc"; }; } ); }; in { - propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.openmpi ]; + propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.mpi ]; enableParallelBuilding = true; preBuild = '' ln -sf ${cfg} mpi.cfg diff --git a/pkgs/tools/misc/hdf5/default.nix b/pkgs/tools/misc/hdf5/default.nix index 0a5032074c1f..fc7bb635040a 100644 --- a/pkgs/tools/misc/hdf5/default.nix +++ b/pkgs/tools/misc/hdf5/default.nix @@ -5,13 +5,14 @@ , gfortran ? null , zlib ? null , szip ? null -, mpi ? null +, mpiSupport ? false +, mpi , enableShared ? !stdenv.hostPlatform.isStatic }: # cpp and mpi options are mutually exclusive # (--enable-unsupported could be used to force the build) -assert !cpp || mpi == null; +assert !cpp || !mpiSupport; let inherit (lib) optional optionals; in @@ -24,7 +25,7 @@ stdenv.mkDerivation rec { }; passthru = { - mpiSupport = (mpi != null); + inherit mpiSupport; inherit mpi; }; @@ -38,13 +39,13 @@ stdenv.mkDerivation rec { propagatedBuildInputs = [] ++ optional (zlib != null) zlib - ++ optional (mpi != null) mpi; + ++ optional mpiSupport mpi; configureFlags = [] ++ optional cpp "--enable-cxx" ++ optional (gfortran != null) "--enable-fortran" ++ optional (szip != null) "--with-szlib=${szip}" - ++ optionals (mpi != null) ["--enable-parallel" "CC=${mpi}/bin/mpicc"] + ++ optionals mpiSupport ["--enable-parallel" "CC=${mpi}/bin/mpicc"] ++ optional enableShared "--enable-shared"; patches = [ diff --git a/pkgs/tools/misc/hpcg/default.nix b/pkgs/tools/misc/hpcg/default.nix index 29799641880c..d6896527ad2a 100644 --- a/pkgs/tools/misc/hpcg/default.nix +++ b/pkgs/tools/misc/hpcg/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, openmpi } : +{ lib, stdenv, fetchurl, mpi } : stdenv.mkDerivation rec { pname = "hpcg"; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - buildInputs = [ openmpi ]; + buildInputs = [ mpi ]; makeFlags = [ "arch=Linux_MPI" ]; diff --git a/pkgs/tools/system/ior/default.nix b/pkgs/tools/system/ior/default.nix index 326602e3d4d5..c2616797da38 100644 --- a/pkgs/tools/system/ior/default.nix +++ b/pkgs/tools/system/ior/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, openmpi, perl, autoreconfHook }: +{ lib, stdenv, fetchFromGitHub, mpi, perl, autoreconfHook }: stdenv.mkDerivation rec { pname = "ior"; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ autoreconfHook ]; - buildInputs = [ openmpi perl ]; + buildInputs = [ mpi perl ]; enableParallelBuilding = true; diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index bd86fed4cb29..360d963fed87 100644 --- a/ |