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| author | Pavol Rusnak <pavol@rusnak.io> | 2021-01-03 13:47:45 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-01-03 13:47:45 +0100 |
| commit | 77364ac7c01f8fa9b548c5283564ceb03fabe610 (patch) | |
| tree | 12df16ba28e8e8ff0f00b073eff75592f63f7bf2 /pkgs/applications/science | |
| parent | 907e95015cd97f8de127a348ce74454ac5823065 (diff) | |
| parent | 9139eb5aeeb11cd3bce46f8c8a4984698331b56e (diff) | |
Merge pull request #108251 from prusnak/bowtie2
bowtie2: 2.3.5.1 -> 2.4.2
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/bowtie2/default.nix | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/pkgs/applications/science/biology/bowtie2/default.nix b/pkgs/applications/science/biology/bowtie2/default.nix index dc818e2fb868..603e5892ff11 100644 --- a/pkgs/applications/science/biology/bowtie2/default.nix +++ b/pkgs/applications/science/biology/bowtie2/default.nix @@ -1,19 +1,19 @@ -{ stdenv, fetchFromGitHub, zlib, tbb, python, perl }: +{ stdenv, fetchFromGitHub, cmake, tbb, zlib }: stdenv.mkDerivation rec { pname = "bowtie2"; - version = "2.3.5.1"; + version = "2.4.2"; src = fetchFromGitHub { owner = "BenLangmead"; repo = pname; rev = "v${version}"; - sha256 = "1l1f0yhjqqvy4lpxfml1xwv7ayimwbpzazvp0281gb4jb5f5mr1a"; + sha256 = "11apzq7l1lk3yxw97g9dfr0gwnvfh58x6apifcblgd66gbip3y1y"; }; - buildInputs = [ zlib tbb python perl ]; + nativeBuildInputs = [ cmake ]; - installFlags = [ "prefix=$(out)" ]; + buildInputs = [ tbb zlib ]; meta = with stdenv.lib; { description = "An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences"; @@ -21,6 +21,6 @@ stdenv.mkDerivation rec { homepage = "http://bowtie-bio.sf.net/bowtie2"; maintainers = with maintainers; [ rybern ]; platforms = platforms.all; - broken = stdenv.isAarch64; + broken = stdenv.isAarch64; # only x86 is supported }; } |